| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0980 |
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| Symbol | mcpC |
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| ID | 7387080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 827614 |
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| End bp | 829449 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643650488 |
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| Product | methyl-accepting chemotaxis protein |
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| Protein accession | YP_002548696 |
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| Protein GI | 222147739 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.442512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGTTTT TATCAAATAT CACCATCGCA AAGAAGATCT ACATTGCCTC GGGGCTTGGC
GTGGCCATGG TTGTGGGCAT GGTTGCCAAC CAGCAATGGA CGAACAGCAC GATCAAGGCA
GCGCAGGACA TTGTCGCGCG TGAACAGACG GTTCTCGATG GTATTAGTGC CAGCGAGAAA
GCATTCGTAG AGATGAAGAG CGGTGTACGC AACATCATGC TCGCACCCAC CGTCAAGGAG
GTGGATGACG AGCTGGCCGC GGTCAATAAA TCAGCCCTCA ACGGTCAAAA CAGTCTGAAA
GAGGCGATGC GCGTTGCTGA AAATCCGAGT GCGTTGCAGG CCATTTCGAC AGGTCTCGGC
GACTACGCAA CGGCTTCCAT CAAGATCAAG GATTTCGTCA AAGAGCAGCG GGCGCAGCAA
AGTCAGGACC TTGTCGCGCT GACCGCCCGC CGTGACCAAT ATACCAGACC AATCACCTCG
AAACTCAACG AGTCCATTCA AAGCGCGGTT GCGGCGTCCC GCAAGGTAAC GACGGATGCC
CGCAGCTCTC TTCAGGCGAC GGAAGCACGC TCGGAGACCA TTAACGGCAC GATCCAGATC
CTGATTGTGC TGGTGCTGAT TGCAACGGCT TTCGTGCTGC GCAGCACCGT GGTGATACCG
ATCAAATTGC TGGTTGAAGC CATGAACAGG CTCTCCTCGG GCGATACAAG CCGTAGGGCG
GATTTTGGCC CACGGGGCGA TGAAATTGGC CTGATGTGCG ATGCCGTTGA GGTTTTCCGC
GAAGATGCCG TTGCCAAGCG CCAGCTGGAG GCCGAGGCGG AAACCAACCG CCGCCGTGCC
GAACAGGAGC GGATACAGAC GCAGCTGAAG GCCGAGGAAG ACGCCCGCGA ACGCTTGATG
ATTGCAACCT CCGGTCTGGC CGCAGGTCTG CGGCGCTTGG CCAGTGGCGA TCTGACGGTT
GAGCTGCGCG AAGCCTTTTC AGAAGAGTTT GAAAGCCTGC GGCAGGACTT TAATCAATCA
GTGCGCACGC TGGGTGAAAC CATGGGCGCT ATCCTCGACT CTGTCAGCAA CATTAATAAC
GGTTCCACTG AGATTGCGTC TGGCGCAGGT GATCTCTCTA AACGCACGGA ACAGCAGGCG
GCAGCCCTTG AAGAAACCTC TGCCGCGCTG GATGAAATCA CCGTGAATGT CTCCAACTCG
GCCAAACGCA CCCAAGAAGC CCGCGCCGTG GTGATTGAGG CCAACAAAGC CGCGCGGCAA
TCTGGCCAGG TGGTGGCCAA CGCCGTCGAT GCCATGCAGC GCATCGAGGC ATCTTCCAGC
CAGATCTCCA ACATCATCGG GGTGATCGAC GAAATTGCCT TCCAGACCAA CCTTCTGGCC
CTGAACGCCG GCGTTGAAGC CGCCCGTGCA GGCGAAGCGG GCAAGGGCTT TGCGGTGGTG
GCACAGGAAG TGCGCGAACT GGCGCAACGC TCGGCGCAGG CCGCCAAGGA AATCAAGGAG
CTGATCCGCA ATTCTTCCGA GGAAGTGGGC AATGGCGTCA ACCTCGTGCG CGACACCGGC
AGCGTGCTCA AAACCATCGA AGACTACGTC TCCACCGCAA ACGGCCATAT GGATGCCATC
GCCACCTCGG CGCAGGAGCA ATCCGTGGGC CTCACCCAGG TCAACAGCGC CGTCAACCAC
ATGGACCAGA TGACCCAACA AAACGCCGCC ATGGTCGAAG AAACTACTGC CGCCAGTGCA
TCACTGGCCG GTGAGGTCAA CAAGCTTCGC CAATTGCTGG GGCAATTCCA GATTGGCCGC
GGTGCCGGGA ATTCCGGCAT GTCCTATGCG GCGTGA
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| Protein sequence | MSFLSNITIA KKIYIASGLG VAMVVGMVAN QQWTNSTIKA AQDIVAREQT VLDGISASEK
AFVEMKSGVR NIMLAPTVKE VDDELAAVNK SALNGQNSLK EAMRVAENPS ALQAISTGLG
DYATASIKIK DFVKEQRAQQ SQDLVALTAR RDQYTRPITS KLNESIQSAV AASRKVTTDA
RSSLQATEAR SETINGTIQI LIVLVLIATA FVLRSTVVIP IKLLVEAMNR LSSGDTSRRA
DFGPRGDEIG LMCDAVEVFR EDAVAKRQLE AEAETNRRRA EQERIQTQLK AEEDARERLM
IATSGLAAGL RRLASGDLTV ELREAFSEEF ESLRQDFNQS VRTLGETMGA ILDSVSNINN
GSTEIASGAG DLSKRTEQQA AALEETSAAL DEITVNVSNS AKRTQEARAV VIEANKAARQ
SGQVVANAVD AMQRIEASSS QISNIIGVID EIAFQTNLLA LNAGVEAARA GEAGKGFAVV
AQEVRELAQR SAQAAKEIKE LIRNSSEEVG NGVNLVRDTG SVLKTIEDYV STANGHMDAI
ATSAQEQSVG LTQVNSAVNH MDQMTQQNAA MVEETTAASA SLAGEVNKLR QLLGQFQIGR
GAGNSGMSYA A
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