Gene Avi_3714 details

Gene Information

• Locus tag: Avi_3714
• Symbol: mcpA
• ID: 7388185
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 3078652
• End bp: 3080691
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643652500
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002550682
• Protein GI: 222149725
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0885803
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGTATTA ATGGTAAAAT ATATCTACTT GTTTTCATTC TCGGCTTTGC CGCATCCCTG 
ATCGGGGCGA TCGGGATTTT CGTGACATTG CGATATGACA ACAAGACCGC ACAGGTTCTC 
AATCTATCCG AGCGCGCCTT CCAGGGTGAG CGACTCAACC GCCTGATCAC CTCGGTGGTG 
ATGGAATCAC GGGGTATCTA TGCGGCGAAA TCGAAGGAAG ATGCCGACAA GTTCGGCAAG 
GGGCTGACAA AAAGTCTCGA TGATATGGAT GCCACGCTTC AAACCTGGCG GAAAATGATA 
CCGGAAACCC AGGTGCAAGC CTTCCAATCC ATGGTTGCCA AGGCAGCGGA ATTCAGGACA 
TTCCGCACGG AAACAGTCCG TTTGGGCACC GAAGTCGGTC CGCAGGCCGC CAATGAGCAG 
GGCAATAACG AGGCCAACCG CGCCAACCGC AAAGCCTTCC AGACCGAGGT AGATGCCGTC 
GTCAGCGCCG ACAAGAAAGA ACTCCAGGCG GTCACGGCAT CGGTCGCCAG CTTCCAGACA 
GCCATGATGA TCCTGATCGT CTCGGTGACG GTCATCTCGA TCCTGATCGG CGTCGGCCTC 
GGTATCTATA TCGGCGTCAA GCAATTGAGC CGCCCGATCG TTCAGCTCAC CGCAGCTATC 
AAGCGTGTCG CCAATGGCGA TTTCGAAACC GACGTGCCGG GCGCCACCCG CAAGGATGAA 
ATCGGCGACA TGGCCTTGGC GGTCGAAACC TTCAAGCGCA ACGGCCAGGA CGTCGCCCGC 
ATGAATGCCC AGGAAGCGGC CCTGCGCGCA AAAAGCGATG ACCTGCAATC CAGCATGTCC 
GTTGTCGTCG CAGCAGCCGC CGATGGCGAT TTCAGCAAGC GGATCGGCAC CCATTATGAC 
GACGCAAATC TTGATCGTTT TGCTAACAAT ATCAATGAGC TGATCGCAAG CGTCGAGCGC 
GGGGTGACGG AAACCCGACG AGTCATCGCC AATCTCGCGA GCGGCGATCT CAGCCAGGAA 
ATGCAAGGCC AGTTCAGAGG CGCGTTCGGC GAATTGCAGG CCAATGTCAA CACCACCTTT 
GAGCGCCTGC GCGACACGAT TTCCAGCATC CGCCACAAGA CGGACGCCAT CAGCGGCAGC 
ACCGGCCAAT TGAGCAATGC CACCAACGAA TTGTCGATGC GCACCGAAAA GCAGGCCGCC 
GCTCTGGAGG AAACATCGGC GGCGCTCGAC GAGATCACAG TCGTGGTGCG CGGCTCTTCG 
GAACGTGCCC AGGAAGCCAG CCGGATCGTG ACAGAAGCCA CGGAAAATGC CGCGCAATCA 
GCCGTCGTGG TGCGCGAAGC CGTGGACGCC ATGGGCCGGA TCGAAAATGC CTCCAAGGAA 
ATTTCCACCA TCATCAACGT GATCGACGAG ATTTCCTTCC AGACCAACCT TCTGGCCCTG 
AATGCCGGTG TGGAAGCCGC CCGCGCGGGT GAGGCCGGCA AGGGTTTCGC CGTGGTTGCC 
CAGGAAGTGC GCGAACTGGC GCAACGCTCC GCCAATGCGG CCAAGGACAT CAAGGCGCTG 
ATCACCAAAT CCGGCCACGA GGTCGAAGGC GGGGTCAAGC TGGTGCAAAA GACCGGCGAG 
GCGCTGGCAA AGATCGAAAG CCGCGTGCTG ACGATCAACG ATCATATCCA TTCCATCGCC 
AATGCGGCCA AGGAACAGGC AACCGGCTTG CATGAAATCA ACGCCGCCAT CAACCAGATG 
GATCAGGTGA CCCAGCAGAA TGCCGCCATG GTCGAGGAAA CCTCAGCTTC CACCCATTCG 
CTCTCCGACG AGGCGCAGAG CCTGGTCGGC CTGCTCAGCC ATTTCAAGAT TTCCGGGCAG 
CAAGGCCAGG TTACGCCTGC GCCTCGACGC AGCGCACCGC AGCCGGTCTC CGCAAACCTA 
ACCGCCCGCA GCCCGGCTCC GTCTCCGTCT CCGGCCCGCG AACGGGTCAA GGCCGTCGCC 
AAGGCCTTTG GCGGCGGTGC AGCTGCCGCT CAATCCCGGG ATCAGTGGGA GGAGTTTTAA 

 

Protein sequence

MRINGKIYLL VFILGFAASL IGAIGIFVTL RYDNKTAQVL NLSERAFQGE RLNRLITSVV 
MESRGIYAAK SKEDADKFGK GLTKSLDDMD ATLQTWRKMI PETQVQAFQS MVAKAAEFRT 
FRTETVRLGT EVGPQAANEQ GNNEANRANR KAFQTEVDAV VSADKKELQA VTASVASFQT 
AMMILIVSVT VISILIGVGL GIYIGVKQLS RPIVQLTAAI KRVANGDFET DVPGATRKDE 
IGDMALAVET FKRNGQDVAR MNAQEAALRA KSDDLQSSMS VVVAAAADGD FSKRIGTHYD 
DANLDRFANN INELIASVER GVTETRRVIA NLASGDLSQE MQGQFRGAFG ELQANVNTTF 
ERLRDTISSI RHKTDAISGS TGQLSNATNE LSMRTEKQAA ALEETSAALD EITVVVRGSS 
ERAQEASRIV TEATENAAQS AVVVREAVDA MGRIENASKE ISTIINVIDE ISFQTNLLAL 
NAGVEAARAG EAGKGFAVVA QEVRELAQRS ANAAKDIKAL ITKSGHEVEG GVKLVQKTGE 
ALAKIESRVL TINDHIHSIA NAAKEQATGL HEINAAINQM DQVTQQNAAM VEETSASTHS 
LSDEAQSLVG LLSHFKISGQ QGQVTPAPRR SAPQPVSANL TARSPAPSPS PARERVKAVA 
KAFGGGAAAA QSRDQWEEF