| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1208 |
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| Symbol | mcpC |
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| ID | 7387600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1022276 |
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| End bp | 1024090 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643650661 |
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| Product | methyl-accepting chemotaxis protein |
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| Protein accession | YP_002548867 |
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| Protein GI | 222147910 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATCT CTCTTGGCCA ACTTCTCATA TCACTGTTCG CAGTCATTCT TCTGGTCGTG
GTCGGCCAGG GCATTTATGC GGTGACTTCG CTGAACACCA TATCGGTTGG GACCAATCAG
ATCGTTGATA AGCGGGTTCC GTCCTTCATC CTCATGGGGC AGATCAATGC CGATCTGGGC
GATATCCGCG TTGCGCAGAG CAATTATCGC AGCGCCGCCA CACCTGAGCA ACGAGCCATC
TTTCTGGGAT CGCTGAACAA GGCCTATGAC GCACTCGCAC AGTCTAGAAA GCAGTATGAG
CCGCTGATCG TCGACAAAGA AGACCAAGAG CTTTACGACA CCTTCTCCAA GGATTGGGCC
AAGGCCGAGC AATTGTGGCA GAAGGTCAAG ACCTTGACGG ACAACGGCAG TGCGGATGAG
GCAAAACAGA TATTTCTGGG AGAGTCACTG GCTGCCTATG GCAAGGCCGG CGACGATATC
CAGGCCGCCG TTGATGATCT GGCCGAAAAT GCCAAAGACG AAGGTGCAGC CAACGCCGAG
CAAATTTCCC TGGCCACGAC CGTGACCTAT ATCGCTCTTG CTCTGGCGTT CAGCATCGGC
ATCGGCGCGG CGCTGATCAG CAGCCTGCGG GTCGTGCGTC CCTTGAAGCA CATGACGGAC
ACTATGCGGA CCCTGTCTTC CGGCGATACC AGCGGCAGCG TGCCTTACAT GAGCCGCAAG
GACGAAATCG GCGCCATGGC CGCAGCCCTT CAGGTGTTTA AAGACGGAAT ATTGCGCAAC
CGCGCCCTGG AAGCCGAAGC CGCCAGCGCC CGCGAAAAGG CAGAATCCGA AAAGCTGCGC
CTTCAGCAGG AAGCCGAAGC CGCCGCACAG AAGAAATTGC AGGAAGCCAC CGCAGGTCTG
GCATCCGGCC TGAAACGCTT GGCCGCAGGC GACCTCGGGT TTGAACTGAA CGAACCGTTT
GCCCCGGAAT TTGACGCTCT GCGCCTCGAC CTGAATACCG CTGTCGCCCA ATTGGGCAGC
ACGATTTCCA CCGTTGCCAC CTCTGCTAAC GCTATCAGCG ACGGCTCACG CGAAGTCAGC
CAGAGCGCGG ACGACCTTTC CAAACGCACC GAACAGCAGG CCGCATCTCT GGAAGAGACC
GCTGCCGCAC TCGACCAGAT CACCGTCAAT GTCAGCAATT CCTCACGGCG TGTCGAAGAA
GCACGTGGCG TGGCCAAGGA AGCCAACAGC AGCGCGGTCC GATCCGGCCA GGTGGTGAGT
GAAGCCATCA ACGCCATGCA GCGTATCGAG CACTCCTCCA ACCAGATCTC CAACATCATC
ACCGTGATCG ACGAGATTGC CTTCCAGACC AATCTCCTGG CGCTGAATGC CGGCGTTGAA
GCCGCCCGCG CCGGCGAAGC GGGCCGTGGC TTTGCCGTGG TTGCCACCGA AGTGCGCGAA
CTGGCGCAAC GCTCGGCCAA GGCCGCGCGC GAAATCAAGG AACTAATCAA CAAATCCACC
CAGGAAGTGG AAAACGGCGT GCGTCAGGTG CAGGAAACCG GCGACGTGCT GAAGGCCATC
GAACATCACG TCACGACAAT CAACGGCCTG ATGGACGCAA TCGCCACCTC CTCGCGTGAA
CAATCGGTCG GCCTGTCGGA GGTCAATACC GCCGTCAACC AGATGGACCA AGTCACCCAG
CAGAATGCCG CCATGGTAGA AGAAACCAGC GCCGCCAGCG CCAACCTTGC GCAAGAAAGC
GTGCGTTTGC AGCAGCTTGT CTCGGACTTC ACACTCCCCA ATACCACCAG CAATCAGAGA
CGCCGGGCGG CGTAA
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| Protein sequence | MRISLGQLLI SLFAVILLVV VGQGIYAVTS LNTISVGTNQ IVDKRVPSFI LMGQINADLG
DIRVAQSNYR SAATPEQRAI FLGSLNKAYD ALAQSRKQYE PLIVDKEDQE LYDTFSKDWA
KAEQLWQKVK TLTDNGSADE AKQIFLGESL AAYGKAGDDI QAAVDDLAEN AKDEGAANAE
QISLATTVTY IALALAFSIG IGAALISSLR VVRPLKHMTD TMRTLSSGDT SGSVPYMSRK
DEIGAMAAAL QVFKDGILRN RALEAEAASA REKAESEKLR LQQEAEAAAQ KKLQEATAGL
ASGLKRLAAG DLGFELNEPF APEFDALRLD LNTAVAQLGS TISTVATSAN AISDGSREVS
QSADDLSKRT EQQAASLEET AAALDQITVN VSNSSRRVEE ARGVAKEANS SAVRSGQVVS
EAINAMQRIE HSSNQISNII TVIDEIAFQT NLLALNAGVE AARAGEAGRG FAVVATEVRE
LAQRSAKAAR EIKELINKST QEVENGVRQV QETGDVLKAI EHHVTTINGL MDAIATSSRE
QSVGLSEVNT AVNQMDQVTQ QNAAMVEETS AASANLAQES VRLQQLVSDF TLPNTTSNQR
RRAA
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