| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1200 |
|---|
| Symbol | |
|---|
| ID | 7387593 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1011002 |
|---|
| End bp | 1013188 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643650654 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_002548860 |
|---|
| Protein GI | 222147903 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATGC AGGTAAGGAC TGTTTCAGGA AAACTTATGC TGGCGGCAGG TGCCGCGATG
GCGGCGCTGA TTGCGTCCTA TACGGCATTT AGCGGCTGGG AAACCAGCAA GCGCGTCAAT
GACCAGGTGG TGGCACTTGC CTCCGAAAAG GCGGCATCGG TCGCCAATCA GGTGGCCGTG
CAGATCACCG ATGTCGTCTC CGCCGGAACC AGTGTGGCCG GCAGCCTGTC CGGTCTGATC
GAAAATGGCT CACGCAACCG CACCGACGTG ATTGCGCTGT TGAAAGGCGT ACCGACCCAT
TACAAAACCA TGTTCGGCGC CTGGATGACC GAAGTGCCGG AAGCCCCGCA GGAACTGAAA
CTGCAAGGCA CCGAGGGCAG CAACAAGGTC GGGATTTTCG CCGCTTACTG GACCAAGGAT
GATAGCGGTA ACCTGGAATT TTCCACCTGG GTCACGACCA CCACCGATCA GTGGTATGCT
GAGCCTCTGA CCACAGGCAA AGGGCTTATT ACCCAGCCCT ATATCTCCAC CACCGGCAAG
CTTTTAACCT CGGTTTCAAC CCCCGTCGTC GTCAAGGGCA AGATCATCGG TCTTGCTGGC
GTTGACGTCC AACTGGGCGA TCTTTCTGCC TCGATCAGCG CCATGACACC ATTTGACGGC
GGCCGGGTGA TGCTGGTGGC CGATAATGGC AATTGGCTGG TGCATCCCGA CAAGGACACG
CTGATGAAGC CCTATGGCGA TACGGGTGCC TCCGATGTCA AGGCCGCCCT TGCCGATGGC
AGGATGCGCA TCATTCACGG CCTGCCTGAC GGTGCGACGC GGCTGGTCTT TCCTTTCACG
GCGCCGGGCA TGAACAAGAC CTGGGCCGCT GTTCTCGATG TTCCCGCCAA AACCTTTTCC
GAACCGGTCG TTGCGCAGGT GACCTCCACG GCCATCAGCG GGTTGATCCT GCTGGTCATT
GCTCTGGTGA TGATCTACGG CGTTTCCATC CTGATCGTGC GCCGCCCGCT GGGCGACGTG
GTGGCCGCCG TGCGCCGCAT GGGCGGTGGC GATTACCAGA CGGAAGTGAC CGGCAAGACC
CGCAGCGACG AATTCGGCAT GCTGGCCTCG GCCCTCGACA GCTTCCGTCT TGATCTCGCC
AATGGCCGGT CCGTGCAGTC GGAACAGGAA AAGCTCAGGG CCAGCGTCGA GAGCGACCGC
GAGCGCCAGA CGGCGCTGGA ACTGGCCAAG GCGGAAGATC TGCGCCATTT CGTCCAGCAG
GTGCAGGCAG GCTTCGACGC GCTGGCCGCA GGCGACCTGA CCGTGCGGAT GAACACCCAT
GTTGCACCGG AATTCGAGGC GATCCGCCAG AATTTCAACA CCTCAGTCGC AGCGCTTGAG
GACGCGATGG GCTCGGTGGT CTCCACCGTC AGCACCATCC GCTCCGGCCT TGGCGAAATA
TCAGCCGCCT CCAACGATCT GGCACGCCGC ACCGAACAGC AGGCCGCCTC GCTGGAAGAA
ACCATTGCTG CACTGGGCGA TGTATCGCGC GGCGTCAACG GCACCGCCGA AGGCGCGGGC
CGCGCGCAAC ATGCCGTCAC CGCCGCCCGC GACAATGCCG CCAAGGGCGG CGACATCGTC
GCCCGGGCCG TGGAAGCGAT GACGGCCATC CAGGGCTCAT CGGAAAAGAT CGGCAACATC
ATCGGCGTCA TCGATGAGAT TGCCTTCCAG ACCAATCTTC TGGCCCTGAA TGCCGGTGTG
GAAGCCGCCC GCGCTGGTGA AGCCGGTAAG GGCTTTGCGG TGGTTGCCCA GGAAGTGCGC
GAACTCGCCC AGCGTTCGGC CAATGCCGCC AAGGAGATCA AGGCACTGAT CTCCACCTCA
AGCGCACAAG TCGAGACCGG CGTCGGCCTC GTCACCGCAT CAGGCACTTC GCTGAAGGAA
ATCGTCGAGC AGGTGGTCGA GATGAGCACC ACCATCACCG ACATCGCCAA CGCCGCCCGC
GAACAGGCGA CCTCGCTACG CGAAGTCACC GCCGCTGGCG ACCAGATGGA CAAGGTCACC
CAGCAGAACG CCGCCATGGT GGAGCAAACC ACCGCAGCAG CCCAGAGCCT GACCCAGGAA
ACCGAACATC TCGCCCAGAT GGTCCAGCGC TTCCGCACCA ATGCCGGAAG CTATGGCCAG
CAGCAACGAT ACGCGATGGC GTCTTGA
|
|---|
| Protein sequence | MSMQVRTVSG KLMLAAGAAM AALIASYTAF SGWETSKRVN DQVVALASEK AASVANQVAV
QITDVVSAGT SVAGSLSGLI ENGSRNRTDV IALLKGVPTH YKTMFGAWMT EVPEAPQELK
LQGTEGSNKV GIFAAYWTKD DSGNLEFSTW VTTTTDQWYA EPLTTGKGLI TQPYISTTGK
LLTSVSTPVV VKGKIIGLAG VDVQLGDLSA SISAMTPFDG GRVMLVADNG NWLVHPDKDT
LMKPYGDTGA SDVKAALADG RMRIIHGLPD GATRLVFPFT APGMNKTWAA VLDVPAKTFS
EPVVAQVTST AISGLILLVI ALVMIYGVSI LIVRRPLGDV VAAVRRMGGG DYQTEVTGKT
RSDEFGMLAS ALDSFRLDLA NGRSVQSEQE KLRASVESDR ERQTALELAK AEDLRHFVQQ
VQAGFDALAA GDLTVRMNTH VAPEFEAIRQ NFNTSVAALE DAMGSVVSTV STIRSGLGEI
SAASNDLARR TEQQAASLEE TIAALGDVSR GVNGTAEGAG RAQHAVTAAR DNAAKGGDIV
ARAVEAMTAI QGSSEKIGNI IGVIDEIAFQ TNLLALNAGV EAARAGEAGK GFAVVAQEVR
ELAQRSANAA KEIKALISTS SAQVETGVGL VTASGTSLKE IVEQVVEMST TITDIANAAR
EQATSLREVT AAGDQMDKVT QQNAAMVEQT TAAAQSLTQE TEHLAQMVQR FRTNAGSYGQ
QQRYAMAS
|
|---|
| |