Gene Avi_2600 details

Gene Information

• Locus tag: Avi_2600
• Symbol: mcpA
• ID: 7386608
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 2151704
• End bp: 2153605
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643651687
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002549875
• Protein GI: 222148918
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.390364
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCATCA GTAATCTGTC TATCCTGAAG AAGGTCAGCC TTCTTGTGGT GCTGATGGGC 
GTTGCGGCAG GCGCTATTGC CGCTGCTGGC GCCTTCGGCC TGTCTTCGCT TGGTGCCTCG 
CTTCAAAATA CCGGACAGCG TGAAGAAGTG GCCCGCGAGG CCATGGACCT GCGCGTCGAC 
ATTATCGCCA TCAGCCGCAT GACCTACCAG CTGGCTTTCG CGCCGGAAAA GGCCGCTGAT 
TTTGCCAAGG AAACCGAAAC GCGCTCCAGC GAAATGCTGG CGCGCCTGCC AAAGATCGCG 
GCCACCGCCG ATGAGAACGA GCAGAAGCAA TTGCAGGATG TTCGTACGAC ACTCAACACC 
TATTTCGACC AGATCCGCCA GATGGTGAAA GTGGCCGGCA CAGACGCCGC CAAGGAACCC 
GGCGTAATGG CCAAGGAGCT TTCCAAGGCC CTTGACGGAC AAAAAGCGGT GACGGCGGCG 
GTCAAGGTCT ACAGCACCTA TTCCGCCAAG ACCCTGTCTG CGGCCCGCAG CAATGCCATT 
GCCAGCTCGC AGCTGACGAT GATCGCACTG CTGTCGACCG CAGCGATCAG CATCGTTCTC 
GGCGTTGCGG TCAGCACGCT GATTGCCCGT CGCGGCATCG TCAATCCGAT CCGCCTTTTG 
ACCGACAATA TGAACCGGAT TGCCAAAGGC GCCCTGGGCG ACGCCATTCC GGGCACAGAG 
CGCGGCGACG AAATCGGTGA GATGGCCCGC GCCCTGGAAA TCTTCCGGGC CAACAGATTG 
CAGATGCAGG AAATGGAAGC GCAGGAAGCC GCGCTCAACA GTCAGAGCAA GGATCTGCAA 
TCCAGCATCA GCAGCATTGT CGCCTCGGCA GCCGCGGGTA ATTTCTCGCA GCGCATTACC 
AAATCCTACG AGGATGCCGA CCTGCAACGC TTCGCCTCCA GCGTCAACGA ACTGGTGGCC 
AATGTCGATC TCGGCGTCAC CGAAGTGCGG CGCGTGATTG CCGCCCTCTC CTCTTCCGAT 
CTCACCCAGG ATATGCGCGG CAATTTCCAG GGCGCCTTCG CCGAATTGCA GAGCAACGTC 
AACCACGCGA TGGCAACGCT TCGCGAAGCC ATGCAAAGCA TTCGCGGCGC TTCGGGTACG 
ATTACCGACA ATTCCGGCGA ACTGAGTTCA GCCGCCAACC AATTGGCCCG CCGGACCGAA 
CAGCAGGCTG CGGCCCTGGA AGAGACCGCA GCAGCGCTCG AAGAAATCAC CACGACGGTT 
CGCACCTCCA CTGAACGCGC CCATGAAGCC AACCAGATGG TGGAGCAGAC CCGCAACAGT 
GCCGGAAAAT CCGGCGAAAT CGTCCGTAGC GCCATTGATG CGATGGGCCG GATCGAGCAA 
TCCTCGCAGA AGATCAGCCA GATCATTTCT GTGATCGACG AAATCGCCTT CCAGACCAAT 
CTCCTGGCGC TGAATGCTGG TGTCGAAGCA GCCCGCGCCG GAGAGGCCGG ACGCGGCTTT 
GCCGTCGTTG CCCAGGAAGT CCGCGAACTG GCCCAGCGCT CCGCCAATGC GGCCCGCGAA 
ATCAAGGCGC TGATCAACAC CTCCGCCGAT GAAGTCAAGG GCGGCGTCTC ACTGGTTCTG 
TCCACCGGCG AAGCTCTCAA CGAAATCGTC GGCCTAGTTG ATCATGTCAA CGGCCATGTG 
GCGAGCATCG CCCGCGCCGC TCAGGAACAG TCGGCAGCAC TGGCTGAAAT CAACACATCC 
GTCAACCACA TGGACCAGAT GACCCAGCAG AACGCCGCCA TGGTCGAAGA AACCACGGCT 
GCCAGCCAGG TCCTGGCCAG TGAATCCCGA CAGTTGCTGG TGCAGCTTGA ACGGTTCCGG 
CTGGAGGATA ACAGACGGGG TGAGTATCGC GCGGTGGCGT AA 

 

Protein sequence

MTISNLSILK KVSLLVVLMG VAAGAIAAAG AFGLSSLGAS LQNTGQREEV AREAMDLRVD 
IIAISRMTYQ LAFAPEKAAD FAKETETRSS EMLARLPKIA ATADENEQKQ LQDVRTTLNT 
YFDQIRQMVK VAGTDAAKEP GVMAKELSKA LDGQKAVTAA VKVYSTYSAK TLSAARSNAI 
ASSQLTMIAL LSTAAISIVL GVAVSTLIAR RGIVNPIRLL TDNMNRIAKG ALGDAIPGTE 
RGDEIGEMAR ALEIFRANRL QMQEMEAQEA ALNSQSKDLQ SSISSIVASA AAGNFSQRIT 
KSYEDADLQR FASSVNELVA NVDLGVTEVR RVIAALSSSD LTQDMRGNFQ GAFAELQSNV 
NHAMATLREA MQSIRGASGT ITDNSGELSS AANQLARRTE QQAAALEETA AALEEITTTV 
RTSTERAHEA NQMVEQTRNS AGKSGEIVRS AIDAMGRIEQ SSQKISQIIS VIDEIAFQTN 
LLALNAGVEA ARAGEAGRGF AVVAQEVREL AQRSANAARE IKALINTSAD EVKGGVSLVL 
STGEALNEIV GLVDHVNGHV ASIARAAQEQ SAALAEINTS VNHMDQMTQQ NAAMVEETTA 
ASQVLASESR QLLVQLERFR LEDNRRGEYR AVA