| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0793 |
|---|
| Symbol | mcpA |
|---|
| ID | 7386289 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 678187 |
|---|
| End bp | 680409 |
|---|
| Gene Length | 2223 bp |
|---|
| Protein Length | 740 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643650360 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_002548570 |
|---|
| Protein GI | 222147613 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACA ATATGAAACT TAACCACAAG ATTTATGGTG GTTTTGGCAT CATCATTGCC
ATACTCATTA CAATTGCAGG GATGTCGGTG TACTCGAACA CCGGCAATCA ATCCGATTTC
TCGGATTATC GCAGCATTGC CCGGCTGACC AACGAAGCGG GCCGCGTGCA GGCGAATATG
CTGGAGGCCC GGCTGGCCTA CCTGAAGTAT CAAGACAATC ATTCTGCCGA TAATCTTGCC
AGTTTTGAAA AGCGAATAGC AACGACCAAG GAGAGTGCTG CCAATCTTTC GTCCATGGCC
CGCACCGATG CCGAAAAATC CGCGTCCGCA GGATTCACGA CAGCCGTTGC AGACTATGAA
AATGGCTTCA AGGCCGTCGT TGCGGCACAG ACGGAACGCG ACAAACTCGT CAGTGAAAGC
CTCGACCGGC TTGGACCCGC AATTCAAAAA TCCACCTCAC AATTGCTCGC TGATTTCGAC
AGCAGTGGCA ATAATGTCGC AGCGTACAAA GCCACCCTGT TCCAAATCTC GACCTTCGTG
ATGCGCTTGT CGGCCACCAA ATATCTGCTG AACAACGAGA GTAAGGATTT CGAAGCCGCG
ATGGCAGCGG CACAGGATGC GCTGGCCCGC AGCACAGAGG TTAGCGCCGC CATCGTCATT
CCCGAGCGCG CTCAACGGTT CAACGCCACT CTGGATGATC TCAACGCCTA TATTAGAGAT
CTCACCAAGA CGCAGGCGAT CATCGCCAAG CGCGATTCCA TCGTCAACAA TGTCATGAAT
GCCGTTGGCC CCAAACTGGG CAAGGAAGCC GAGGATTTGA AGCTGGTTCT GAAAAAAGAG
CAGGACACGC TCGGCCCTCG CATCGATGAG ACAATGCGCG ATGCGATCAC CACCGCCATT
ATTGTCGCCG CACTCGCCCT TGTCGTCGCC ACCGTGCTGG CTTTCATAAT CGCCCGCAGC
ATCAGCCGCC CGATCTTTGC GATCACCTCG GCCATGGGCA AGCTGGCCGA CAACCAGCTG
GAAACGGATA TTCCAGGCCT CGCATACGAT AACGAGGTCG GGCTGATGGC CAAGGCCGTC
AATGTCTTCA AGCAGAATGC CCTCAAAATT CGCCAGTTGG CGGCCCAGGA AGCGGCTTTG
CAGCAGAAGA ATGCCGATCT GCAATCCGAT ATTGCCACAG TCGTTTCGGC AGCAGTGGCC
GGTGACTTCA CAAGCCGCAT CACCAAGCAC TACGACAACC CGGATCTGGA CGCCTTTGCC
CATAACGTCA ACACGCTGGT CGACTCCGTG GACAAGGGCA TAGCGGAAAC CAGGCGCGTT
GTGTCCGCCC TTTCCAATGG CGACCTGACG GAAGCCATGA GCGGCAAGTA TCAAGGTGTG
TTTGCCGAGC TGCAAACCAA TGTCAATGAC ACCATGACCA AGCTGCGGCT GCTGATGGAG
CAGGTGCGCC AATCCGCCGA TGTCATCAAT GGCGGTGCCG ATGAAATCCG CCAGGCCTCC
AACGATCTGT CTCGCCGGAC AGAGACCCAG GCGGCCTCGC TCGAAGAAAC CTCGTCAGCC
CTGGAAGAAA TCACCGTGGC GGTCAAAACC TCGACCGAAA GGGCGCAGGA ATCCAGCAAA
ATGGTCTCCG AAGCCCGTCA ATTTGCCGAG CAATCCGCCA ATGTCGTCCA GGACGCGACA
GCCGCCATGA GCCGCATCGA GCAAGCCTCC AACGAAATCA CCCAGATCAT CAATGTGATT
GACGAGATTG CTTTCCAGAC CAACCTTCTG GCCCTCAATG CCGGGGTAGA AGCTGCCCGT
GCTGGCGAGG CCGGCAAGGG ATTTGCGGTC GTGGCCCAGG AAGTGCGCGA ACTGGCCCAA
CGCTCGGCAA CCGCTGCCAA GGATATCAAG GCCCTGATCA CCAAGTCCTC AAATGAAGTG
GAGACGGGCG TGAGACTTGT GACCGGCACC GGCGAGGCGC TGAAGGAAAT TCAGCAAAAG
GTGATTGGCA TTTCCAGCCA GGTCACATCC ATTGCCACGG CGGCAAACGA GCAATCGACC
GGTCTCAGCG AGGTCAACAC CGCCGTCAAC CAGATGGACC AGATGACCCA GCAAAATGCC
GCCATGGTCG AGGAGGCTGC TGCCAGCACA TCGAAACTGG CCGAGGAAAC CGTCAACCTG
CTCAATCTGA TCTCGCAGTT CAAGGTCCAC AAGGCCGACC ACGGCATGCG TCGCGCCGCC
TGA
|
|---|
| Protein sequence | MLDNMKLNHK IYGGFGIIIA ILITIAGMSV YSNTGNQSDF SDYRSIARLT NEAGRVQANM
LEARLAYLKY QDNHSADNLA SFEKRIATTK ESAANLSSMA RTDAEKSASA GFTTAVADYE
NGFKAVVAAQ TERDKLVSES LDRLGPAIQK STSQLLADFD SSGNNVAAYK ATLFQISTFV
MRLSATKYLL NNESKDFEAA MAAAQDALAR STEVSAAIVI PERAQRFNAT LDDLNAYIRD
LTKTQAIIAK RDSIVNNVMN AVGPKLGKEA EDLKLVLKKE QDTLGPRIDE TMRDAITTAI
IVAALALVVA TVLAFIIARS ISRPIFAITS AMGKLADNQL ETDIPGLAYD NEVGLMAKAV
NVFKQNALKI RQLAAQEAAL QQKNADLQSD IATVVSAAVA GDFTSRITKH YDNPDLDAFA
HNVNTLVDSV DKGIAETRRV VSALSNGDLT EAMSGKYQGV FAELQTNVND TMTKLRLLME
QVRQSADVIN GGADEIRQAS NDLSRRTETQ AASLEETSSA LEEITVAVKT STERAQESSK
MVSEARQFAE QSANVVQDAT AAMSRIEQAS NEITQIINVI DEIAFQTNLL ALNAGVEAAR
AGEAGKGFAV VAQEVRELAQ RSATAAKDIK ALITKSSNEV ETGVRLVTGT GEALKEIQQK
VIGISSQVTS IATAANEQST GLSEVNTAVN QMDQMTQQNA AMVEEAAAST SKLAEETVNL
LNLISQFKVH KADHGMRRAA
|
|---|
| |