| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3360 |
|---|
| Symbol | |
|---|
| ID | 3935833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3411768 |
|---|
| End bp | 3413714 |
|---|
| Gene Length | 1947 bp |
|---|
| Protein Length | 648 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637905733 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_511302 |
|---|
| Protein GI | 89055851 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.59059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCTCG CCAATATGAC ATTGAAGACC AAACTGATCG TCACGATAGC TGCGATGCTG
ATCCTCCTTG CTGGCGTGCT CGGGTATCTG GGGACGCAAA AAATCCAGGC CGCACTGAAT
GAGTCGATTT CCGCGGAGGA ACGCGCCGGT ATCCGGGCGT TGGTCTATAC CTTGCAAACG
TCCCATGCAG CGCTGACGCA GCACGCGGGC GCCGATGCCG GGGGCTTTGA AATTACCTGG
CCACGGATGC CCAACACCTT GATGTTCGAC GATGTAGACG CCGCCAGCGC GATATCCGGA
CTGAAGCCGA CCGTCTTCCA CTTCGACGCA GAGACCGGAG ACTTCATGCG GATTGCGACC
ACCATGCGCG AAGAAAATGG CAATCGCTCG GTTGCGACCC CGTTGGCCCG GGGGCCGGTC
TACGACGCAT TGATCAATGG AGAGACTTTC TCGGGCGCAG CAGAGGTCAG AGGCCACTTG
TTTCGCGCCC TCTACGTGCC TGTTTTCGAT GGGACCGGTG CGATTGTAGG GGCGTTCGCC
GTCGGCCGCC CGATTGAAAC TTTGACGGCG ATGATCCGTC AAAACATGAT TGAAACGCTC
CTTGTTACCC TCGGCATCCT TACCGTGATG GTGCTGGTCG CCTTCTTCTC GATCCGCAAC
ATGCTGGCCC CTCTGACCCA TGTTGCACGG TCGCTCGGGA AGCTGTCAGA AGGCACGCTG
GATGAAGACA TCGGCCATCA GAACCGAAAC GACGAGATTG GAAAAATCTC CAAGGCAATG
GTCGTATTGC AAGAGTCGAT GCAGACGGCG GAAGAGCTCA AGGCCGCCGA TGTGGAGCGG
TCAACGATCG TCGCAGCAAA ACAGCAAGAG CAAGATATTG TTGTCACTGC CTTGACCCAG
GGCCTGTCCC GACTTGGCAA TCTTGACCTG ACCCAGCAGA TCGAAAACAC GCCCGAGGCC
CCCTTCCCCG CAGATTATGA AGAACTGCGC ACGTCCTACA ACATGCTTTT GGACAACTTG
TCCGAGAGCG TGGAGGCGAT CCGTGACGTC GCCACCGAAG TGTCCCACGA CGCGCGAGAA
ATGGCGGAGG CGTCCTCGGA TCTGTCATCG CGAACCGAAA GCCAGGCGGC AACGCTGGAA
CAATCGGCCG CAGCCCTTGA GGAAATGAGT GCGAGCGTGC TGTCCACCGC CGCAAACGCA
AGCGACGCCG AGACAACGAC GCAGGAGAAC CGGACCAATG CCAAGCGCAC CGGCGAGATC
GTCGACACCG CGATCAAGGC CATGTCGGCC ATCGAAGAAT CCTCCAAAAA GATCACTCAG
ATCATTTCGG TCATCGACGA TATCGCCTTC CAGACCAACC TCCTTGCCCT GAATGCCGGG
GTCGAGGCGG CGCGCGCGGG CGAAGCTGGC AGGGGATTTG CCGTGGTCGC CTCCGAAGTG
CGCGCCCTGG CGCAGCACTC CTCGGCGTCC GCACAAGAGA TCAAGGGGTT GATCGCGTCG
TCCAGCGACC ATGTCGATAA CGGCAGTAAG CTGGTTCACG ATGCGGGACG ATCCATCAAC
GACATCATAG ATCGCGTCGA CCGTGTCACA AGCCTGGTGT CCGACATCGC AGTGTCTGCG
AAAGAACAGT CGATCGGCGT GACGGAGATC AACGCTGCCG TCCGGGACCT GGACACTGCC
ACCCAGGGCA ACGCCGCGAT GGCGGAAGAG ACGTCCGCCG CCAGTGAAGG GCTGACAAAT
GCCGCAGACC GGCTGGCCAG CCATCTGGCA CGTTTCAAGC TGGCGGATGC ATCCGACGCC
AACTGGGCTG CCGCGGCGGC AACGGCACCG GCTGCGCGTG CCGCCGACGG CCCCCAAGAC
GCAGATGCAT TCGCACCCCC TTCCCCCGCA ATAGGCGGCA CCCGATCGGC ATCGACCGCG
CCGGTCAACG CCTTTCAGGA CTTCTGA
|
|---|
| Protein sequence | MFLANMTLKT KLIVTIAAML ILLAGVLGYL GTQKIQAALN ESISAEERAG IRALVYTLQT
SHAALTQHAG ADAGGFEITW PRMPNTLMFD DVDAASAISG LKPTVFHFDA ETGDFMRIAT
TMREENGNRS VATPLARGPV YDALINGETF SGAAEVRGHL FRALYVPVFD GTGAIVGAFA
VGRPIETLTA MIRQNMIETL LVTLGILTVM VLVAFFSIRN MLAPLTHVAR SLGKLSEGTL
DEDIGHQNRN DEIGKISKAM VVLQESMQTA EELKAADVER STIVAAKQQE QDIVVTALTQ
GLSRLGNLDL TQQIENTPEA PFPADYEELR TSYNMLLDNL SESVEAIRDV ATEVSHDARE
MAEASSDLSS RTESQAATLE QSAAALEEMS ASVLSTAANA SDAETTTQEN RTNAKRTGEI
VDTAIKAMSA IEESSKKITQ IISVIDDIAF QTNLLALNAG VEAARAGEAG RGFAVVASEV
RALAQHSSAS AQEIKGLIAS SSDHVDNGSK LVHDAGRSIN DIIDRVDRVT SLVSDIAVSA
KEQSIGVTEI NAAVRDLDTA TQGNAAMAEE TSAASEGLTN AADRLASHLA RFKLADASDA
NWAAAAATAP AARAADGPQD ADAFAPPSPA IGGTRSASTA PVNAFQDF
|
|---|
| |