Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_2608 |
Symbol | mcpA |
ID | 7386613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 2157466 |
End bp | 2159433 |
Gene Length | 1968 bp |
Protein Length | 655 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651692 |
Product | methyl-accepting chemotaxis protein |
Protein accession | YP_002549880 |
Protein GI | 222148923 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.445883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACATC TGCCAATCAT CGGGAAATTT CTATCCATCA TGGCCATCTT CGGCCTGTTT GCGCTTGGCG TAGCTGGCTA TTCCGGGCTG AAGTTGCAAA CGATTGACTC CGCTTATAGC GGCCTTTTGA ATGAGGAGGC TAAGGCCTCG CTGAGCATGG CCCGTGCCAA CAGGTCTTTG CAGGCGGTCC GAGCGTCCTT GGCGGATGTC ATGCTGTCGC GCACCGATGA GCTTAATCAA TCCGCGACAA AGGAATTTGA GGCGAACCGA ACCTCTTTCA TCAGCTTTAT GGACACGGCG GCAACGGCAA TGCCCACCAA TAGCCAAATC CCCGCCCTGA AAGCTGAGGG ATTAAAAATT TTCGATCAGG CCTGCGCCAA TGCCTTGCAG GTCGGCAAAG CCGCGACAAC CGATGAGGAT GTGAAGAAAT CCCAGGCTGT CTTCCTGAAG GAATGCCAGC CGGAATTTGC AAAGCTTTCC CCGCGTTTCA CGGCAGCAGT GACGGAAATT GGCAAGGCTG TCGAAGTAGA AAGCAATGAC CTCACCGATT TGACCAATAG CACGGTGTTG ATGACTGTGG CTGGGGTGAT TGGTGGCCTC ATTGTTGTTC TGACGATTGG CTTTTTTGCC ATCCGTGCCT GGTTGGTGGT CCCGATCCGC GATCTGGCCG CCAAGATGGG CATCCTGTCC GGTGGTGATC TTTCGGCAGT GGTAGACGGC ACAGACCGTC GTGACGAAAT TGGCACCATG GCGCGTGCCG TGCAGATCTT CAAGGATAAC GGTCTTGCCG CTCGCGAGCT GGAAAAACAG GCCGCTGCGG TCCGCGACAT GAGTGAAGTG GAACGCCAGC GCGTTGCCGA GGCCGATGCC AAGCGCGCCG CGGAAATGGC CCAGGCAACG TCTGGTCTTG CGGAAGGCTT GAAGCGGCTT TCGGCTGGGG ATCTCACGTT CCAGCTTACC CAGAATTTTG CCGGTGAATT CGAAGGTTTG CGGACTGACT TCAACAGCAC GGTTGAGCAA TTGCGTGACA CGATGTCGTC CGTTGCCATC TCGACCAGCT CGATTGACAG CGGTTCGCGA GAAGTGAGCC AGAGCGCTAA CGACCTGTCG AAGCGTACCG AACAGCAGGC AGCCTCGCTG GAAGAAACCG CAGCGGCACT GGATCAGATC ACCACCAACG TCTCTAATTC CTCCAAGCGT GCGGAAGAGG CCCGGGCGAT GGCCGTTCAG GCCAACCAGT CGGCCCGGCA GTCCGGCGAA GTGGTCTCGA ATGCCGTCAA CGCCATGCAG CGGATCGAGC AGTCGTCCAG CCAGATCTCC AACATTATCG GTGTGATCGA CGAAATCGCC TTCCAGACCA ATCTTCTGGC GCTGAATGCC GGTGTGGAAG CGGCGCGGGC AGGTGAGGCT GGTAAGGGCT TTGCCGTGGT CGCCCAGGAA GTGCGCGAAC TTGCCCAGCG CTCTGCCCAG GCTGCCAAGG AAATCAAGGA CCTGATCCGC AATTCCGCCA GCGAAGTTGA AAACGGCGTG AAGCTGGTGA CGGCAACCGG TGAAGTTCTG AAGGTGATCG AAGGCCATGT CGTCGCCATC AATGGCCAGC TCGATGCCAT CGCCATTTCG GCGCGCGAAC AGTCCGTCGG ACTTTCCGAG GTCAATATCG CGGTTAACCA AATGGACCAG GTGACCCAGC AGAATGCCGC CATGGTGGAA GAAGCCACCG CCGCCAGTTC GTCGCTGGCC AATGAAGCGG AAAAGCTGCG CCATCTGGTC GGTCAGTTCC AGATTGGTTC TGGTTCATCA GGCTTAGTGG CCAATGCCGC TCCTTCTGGA GGCAGATCCG CTGGTCCTGT TCCAGCCAGC GCCGGGCAAA GGCCTGTCGC GTCGCCCGCC CGCCGCATGG TCGGTCAGGT CGCCAAGGCA CTCGGCATGA ATACCGCAGC CAAGCAGGAA AGCTGGGAAG AGTTTTAA
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Protein sequence | MKHLPIIGKF LSIMAIFGLF ALGVAGYSGL KLQTIDSAYS GLLNEEAKAS LSMARANRSL QAVRASLADV MLSRTDELNQ SATKEFEANR TSFISFMDTA ATAMPTNSQI PALKAEGLKI FDQACANALQ VGKAATTDED VKKSQAVFLK ECQPEFAKLS PRFTAAVTEI GKAVEVESND LTDLTNSTVL MTVAGVIGGL IVVLTIGFFA IRAWLVVPIR DLAAKMGILS GGDLSAVVDG TDRRDEIGTM ARAVQIFKDN GLAARELEKQ AAAVRDMSEV ERQRVAEADA KRAAEMAQAT SGLAEGLKRL SAGDLTFQLT QNFAGEFEGL RTDFNSTVEQ LRDTMSSVAI STSSIDSGSR EVSQSANDLS KRTEQQAASL EETAAALDQI TTNVSNSSKR AEEARAMAVQ ANQSARQSGE VVSNAVNAMQ RIEQSSSQIS NIIGVIDEIA FQTNLLALNA GVEAARAGEA GKGFAVVAQE VRELAQRSAQ AAKEIKDLIR NSASEVENGV KLVTATGEVL KVIEGHVVAI NGQLDAIAIS AREQSVGLSE VNIAVNQMDQ VTQQNAAMVE EATAASSSLA NEAEKLRHLV GQFQIGSGSS GLVANAAPSG GRSAGPVPAS AGQRPVASPA RRMVGQVAKA LGMNTAAKQE SWEEF
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