Gene Avi_2608 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2608 
SymbolmcpA 
ID7386613 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp2157466 
End bp2159433 
Gene Length1968 bp 
Protein Length655 aa 
Translation table11 
GC content58% 
IMG OID643651692 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_002549880 
Protein GI222148923 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.445883 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACATC TGCCAATCAT CGGGAAATTT CTATCCATCA TGGCCATCTT CGGCCTGTTT 
GCGCTTGGCG TAGCTGGCTA TTCCGGGCTG AAGTTGCAAA CGATTGACTC CGCTTATAGC
GGCCTTTTGA ATGAGGAGGC TAAGGCCTCG CTGAGCATGG CCCGTGCCAA CAGGTCTTTG
CAGGCGGTCC GAGCGTCCTT GGCGGATGTC ATGCTGTCGC GCACCGATGA GCTTAATCAA
TCCGCGACAA AGGAATTTGA GGCGAACCGA ACCTCTTTCA TCAGCTTTAT GGACACGGCG
GCAACGGCAA TGCCCACCAA TAGCCAAATC CCCGCCCTGA AAGCTGAGGG ATTAAAAATT
TTCGATCAGG CCTGCGCCAA TGCCTTGCAG GTCGGCAAAG CCGCGACAAC CGATGAGGAT
GTGAAGAAAT CCCAGGCTGT CTTCCTGAAG GAATGCCAGC CGGAATTTGC AAAGCTTTCC
CCGCGTTTCA CGGCAGCAGT GACGGAAATT GGCAAGGCTG TCGAAGTAGA AAGCAATGAC
CTCACCGATT TGACCAATAG CACGGTGTTG ATGACTGTGG CTGGGGTGAT TGGTGGCCTC
ATTGTTGTTC TGACGATTGG CTTTTTTGCC ATCCGTGCCT GGTTGGTGGT CCCGATCCGC
GATCTGGCCG CCAAGATGGG CATCCTGTCC GGTGGTGATC TTTCGGCAGT GGTAGACGGC
ACAGACCGTC GTGACGAAAT TGGCACCATG GCGCGTGCCG TGCAGATCTT CAAGGATAAC
GGTCTTGCCG CTCGCGAGCT GGAAAAACAG GCCGCTGCGG TCCGCGACAT GAGTGAAGTG
GAACGCCAGC GCGTTGCCGA GGCCGATGCC AAGCGCGCCG CGGAAATGGC CCAGGCAACG
TCTGGTCTTG CGGAAGGCTT GAAGCGGCTT TCGGCTGGGG ATCTCACGTT CCAGCTTACC
CAGAATTTTG CCGGTGAATT CGAAGGTTTG CGGACTGACT TCAACAGCAC GGTTGAGCAA
TTGCGTGACA CGATGTCGTC CGTTGCCATC TCGACCAGCT CGATTGACAG CGGTTCGCGA
GAAGTGAGCC AGAGCGCTAA CGACCTGTCG AAGCGTACCG AACAGCAGGC AGCCTCGCTG
GAAGAAACCG CAGCGGCACT GGATCAGATC ACCACCAACG TCTCTAATTC CTCCAAGCGT
GCGGAAGAGG CCCGGGCGAT GGCCGTTCAG GCCAACCAGT CGGCCCGGCA GTCCGGCGAA
GTGGTCTCGA ATGCCGTCAA CGCCATGCAG CGGATCGAGC AGTCGTCCAG CCAGATCTCC
AACATTATCG GTGTGATCGA CGAAATCGCC TTCCAGACCA ATCTTCTGGC GCTGAATGCC
GGTGTGGAAG CGGCGCGGGC AGGTGAGGCT GGTAAGGGCT TTGCCGTGGT CGCCCAGGAA
GTGCGCGAAC TTGCCCAGCG CTCTGCCCAG GCTGCCAAGG AAATCAAGGA CCTGATCCGC
AATTCCGCCA GCGAAGTTGA AAACGGCGTG AAGCTGGTGA CGGCAACCGG TGAAGTTCTG
AAGGTGATCG AAGGCCATGT CGTCGCCATC AATGGCCAGC TCGATGCCAT CGCCATTTCG
GCGCGCGAAC AGTCCGTCGG ACTTTCCGAG GTCAATATCG CGGTTAACCA AATGGACCAG
GTGACCCAGC AGAATGCCGC CATGGTGGAA GAAGCCACCG CCGCCAGTTC GTCGCTGGCC
AATGAAGCGG AAAAGCTGCG CCATCTGGTC GGTCAGTTCC AGATTGGTTC TGGTTCATCA
GGCTTAGTGG CCAATGCCGC TCCTTCTGGA GGCAGATCCG CTGGTCCTGT TCCAGCCAGC
GCCGGGCAAA GGCCTGTCGC GTCGCCCGCC CGCCGCATGG TCGGTCAGGT CGCCAAGGCA
CTCGGCATGA ATACCGCAGC CAAGCAGGAA AGCTGGGAAG AGTTTTAA
 
Protein sequence
MKHLPIIGKF LSIMAIFGLF ALGVAGYSGL KLQTIDSAYS GLLNEEAKAS LSMARANRSL 
QAVRASLADV MLSRTDELNQ SATKEFEANR TSFISFMDTA ATAMPTNSQI PALKAEGLKI
FDQACANALQ VGKAATTDED VKKSQAVFLK ECQPEFAKLS PRFTAAVTEI GKAVEVESND
LTDLTNSTVL MTVAGVIGGL IVVLTIGFFA IRAWLVVPIR DLAAKMGILS GGDLSAVVDG
TDRRDEIGTM ARAVQIFKDN GLAARELEKQ AAAVRDMSEV ERQRVAEADA KRAAEMAQAT
SGLAEGLKRL SAGDLTFQLT QNFAGEFEGL RTDFNSTVEQ LRDTMSSVAI STSSIDSGSR
EVSQSANDLS KRTEQQAASL EETAAALDQI TTNVSNSSKR AEEARAMAVQ ANQSARQSGE
VVSNAVNAMQ RIEQSSSQIS NIIGVIDEIA FQTNLLALNA GVEAARAGEA GKGFAVVAQE
VRELAQRSAQ AAKEIKDLIR NSASEVENGV KLVTATGEVL KVIEGHVVAI NGQLDAIAIS
AREQSVGLSE VNIAVNQMDQ VTQQNAAMVE EATAASSSLA NEAEKLRHLV GQFQIGSGSS
GLVANAAPSG GRSAGPVPAS AGQRPVASPA RRMVGQVAKA LGMNTAAKQE SWEEF