Gene Avi_2608 details

Gene Information

• Locus tag: Avi_2608
• Symbol: mcpA
• ID: 7386613
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 2157466
• End bp: 2159433
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651692
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002549880
• Protein GI: 222148923
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.445883
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACATC TGCCAATCAT CGGGAAATTT CTATCCATCA TGGCCATCTT CGGCCTGTTT 
GCGCTTGGCG TAGCTGGCTA TTCCGGGCTG AAGTTGCAAA CGATTGACTC CGCTTATAGC 
GGCCTTTTGA ATGAGGAGGC TAAGGCCTCG CTGAGCATGG CCCGTGCCAA CAGGTCTTTG 
CAGGCGGTCC GAGCGTCCTT GGCGGATGTC ATGCTGTCGC GCACCGATGA GCTTAATCAA 
TCCGCGACAA AGGAATTTGA GGCGAACCGA ACCTCTTTCA TCAGCTTTAT GGACACGGCG 
GCAACGGCAA TGCCCACCAA TAGCCAAATC CCCGCCCTGA AAGCTGAGGG ATTAAAAATT 
TTCGATCAGG CCTGCGCCAA TGCCTTGCAG GTCGGCAAAG CCGCGACAAC CGATGAGGAT 
GTGAAGAAAT CCCAGGCTGT CTTCCTGAAG GAATGCCAGC CGGAATTTGC AAAGCTTTCC 
CCGCGTTTCA CGGCAGCAGT GACGGAAATT GGCAAGGCTG TCGAAGTAGA AAGCAATGAC 
CTCACCGATT TGACCAATAG CACGGTGTTG ATGACTGTGG CTGGGGTGAT TGGTGGCCTC 
ATTGTTGTTC TGACGATTGG CTTTTTTGCC ATCCGTGCCT GGTTGGTGGT CCCGATCCGC 
GATCTGGCCG CCAAGATGGG CATCCTGTCC GGTGGTGATC TTTCGGCAGT GGTAGACGGC 
ACAGACCGTC GTGACGAAAT TGGCACCATG GCGCGTGCCG TGCAGATCTT CAAGGATAAC 
GGTCTTGCCG CTCGCGAGCT GGAAAAACAG GCCGCTGCGG TCCGCGACAT GAGTGAAGTG 
GAACGCCAGC GCGTTGCCGA GGCCGATGCC AAGCGCGCCG CGGAAATGGC CCAGGCAACG 
TCTGGTCTTG CGGAAGGCTT GAAGCGGCTT TCGGCTGGGG ATCTCACGTT CCAGCTTACC 
CAGAATTTTG CCGGTGAATT CGAAGGTTTG CGGACTGACT TCAACAGCAC GGTTGAGCAA 
TTGCGTGACA CGATGTCGTC CGTTGCCATC TCGACCAGCT CGATTGACAG CGGTTCGCGA 
GAAGTGAGCC AGAGCGCTAA CGACCTGTCG AAGCGTACCG AACAGCAGGC AGCCTCGCTG 
GAAGAAACCG CAGCGGCACT GGATCAGATC ACCACCAACG TCTCTAATTC CTCCAAGCGT 
GCGGAAGAGG CCCGGGCGAT GGCCGTTCAG GCCAACCAGT CGGCCCGGCA GTCCGGCGAA 
GTGGTCTCGA ATGCCGTCAA CGCCATGCAG CGGATCGAGC AGTCGTCCAG CCAGATCTCC 
AACATTATCG GTGTGATCGA CGAAATCGCC TTCCAGACCA ATCTTCTGGC GCTGAATGCC 
GGTGTGGAAG CGGCGCGGGC AGGTGAGGCT GGTAAGGGCT TTGCCGTGGT CGCCCAGGAA 
GTGCGCGAAC TTGCCCAGCG CTCTGCCCAG GCTGCCAAGG AAATCAAGGA CCTGATCCGC 
AATTCCGCCA GCGAAGTTGA AAACGGCGTG AAGCTGGTGA CGGCAACCGG TGAAGTTCTG 
AAGGTGATCG AAGGCCATGT CGTCGCCATC AATGGCCAGC TCGATGCCAT CGCCATTTCG 
GCGCGCGAAC AGTCCGTCGG ACTTTCCGAG GTCAATATCG CGGTTAACCA AATGGACCAG 
GTGACCCAGC AGAATGCCGC CATGGTGGAA GAAGCCACCG CCGCCAGTTC GTCGCTGGCC 
AATGAAGCGG AAAAGCTGCG CCATCTGGTC GGTCAGTTCC AGATTGGTTC TGGTTCATCA 
GGCTTAGTGG CCAATGCCGC TCCTTCTGGA GGCAGATCCG CTGGTCCTGT TCCAGCCAGC 
GCCGGGCAAA GGCCTGTCGC GTCGCCCGCC CGCCGCATGG TCGGTCAGGT CGCCAAGGCA 
CTCGGCATGA ATACCGCAGC CAAGCAGGAA AGCTGGGAAG AGTTTTAA 

 

Protein sequence

MKHLPIIGKF LSIMAIFGLF ALGVAGYSGL KLQTIDSAYS GLLNEEAKAS LSMARANRSL 
QAVRASLADV MLSRTDELNQ SATKEFEANR TSFISFMDTA ATAMPTNSQI PALKAEGLKI 
FDQACANALQ VGKAATTDED VKKSQAVFLK ECQPEFAKLS PRFTAAVTEI GKAVEVESND 
LTDLTNSTVL MTVAGVIGGL IVVLTIGFFA IRAWLVVPIR DLAAKMGILS GGDLSAVVDG 
TDRRDEIGTM ARAVQIFKDN GLAARELEKQ AAAVRDMSEV ERQRVAEADA KRAAEMAQAT 
SGLAEGLKRL SAGDLTFQLT QNFAGEFEGL RTDFNSTVEQ LRDTMSSVAI STSSIDSGSR 
EVSQSANDLS KRTEQQAASL EETAAALDQI TTNVSNSSKR AEEARAMAVQ ANQSARQSGE 
VVSNAVNAMQ RIEQSSSQIS NIIGVIDEIA FQTNLLALNA GVEAARAGEA GKGFAVVAQE 
VRELAQRSAQ AAKEIKDLIR NSASEVENGV KLVTATGEVL KVIEGHVVAI NGQLDAIAIS 
AREQSVGLSE VNIAVNQMDQ VTQQNAAMVE EATAASSSLA NEAEKLRHLV GQFQIGSGSS 
GLVANAAPSG GRSAGPVPAS AGQRPVASPA RRMVGQVAKA LGMNTAAKQE SWEEF