| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2775 |
|---|
| Symbol | mcpA |
|---|
| ID | 7388422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2312094 |
|---|
| End bp | 2313770 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643651825 |
|---|
| Product | methyl-accepting chemotaxis protein |
|---|
| Protein accession | YP_002550010 |
|---|
| Protein GI | 222149053 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.536477 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTATTT TTGGACTGGG TGCTGATGCC AGATCGGAAG TTTCGGCTCT TCGCAAGTCG
CAGGCCGTCA TAGAATTCAG CTTGGATGGC ACCATTTTGG ATGCCAATGA CAATTTTTGT
CGGGCGCTCG GCTACAGTCT GGCTGAAATC AAAGGCAAGC ACCACCGCAT GTTCGTCGAT
GCCAGCGAGG TTGAGACCAG CGATTACCGG AATTTTTGGG AAGGCTTACG GCAGGGTAAA
TTCCAGCGCG CTCAATATCG TCGTGTTGCC AAGGACGGTC GAGATGTGTG GATCGAAGCC
TCATACAATC CGATAATGAA GGGTGATAGG CCCTATAAGG TCGTCAAATA CGCCACGGAT
ATCACCGCCG TAAAATTGCA GGCGTTGGAG GATGATGCCA AGCTGAAGGC GATTTCGACC
TCGATGGCGG TCATCGAGTT TACCCCTGAT GGCAAGATCA TCACCGCCAA TGAAAATTTC
TGCAAGGCGA TGGGCTATAG TCTGACGGAA CTTGTCGGGC GCCATCACAG TCTGTTTTGT
GACAAGGCCT ATACGTCTTC CACAGACTAC ACATCTTTCT GGCGGGATCT GGCGGCTGGA
CGGACCTTGG CCAATGAGTT CCGGCGCATC GCAAAGGACG GCCGCGATGT CTGGATACAG
GCATCCTACA ATCCGATCTT CGATTCGCGT GGAAAAGTCT ATAAGGTGGT GAAATTTGCA
ACCGATGTGT CGAGCCGGAT GGATGCTATT TCCCATCTGG GTGCCGCACT GAAGGCGCTG
GCGGGCGGCG ATCTGACCGG CACGCTGAAC AACATGTTCG TGCCGACCAT GGAAAAACTG
CGGATCGATT TCAACGAAGC CCTCAGCCAT TTGCGCAAGA CAATGGACGG TGTCGCCCTC
AGCGCCCGGT CCATCGCGTC GAGCACCAAT GAAATCAAGG AGGCCGCCAA CGACCTGTCG
CGCCGTACCG AAGCACAGGC AGCCTCCGTG GAGGAATCAG CTGCGTCTCT GGAAGAAGTC
ACCACGACGG TTGCCGACTC CGCCAAGCGT GCCGAGGAGG TTGGCCGGTT GATGGAGCAG
ACCCGGCTGA ATACGGAGCA ATCCAGCGTT ATCGTCAGGG ATGCCGTGGT TGCCATGAAT
GAGATCGAGC AGTCGTCCGG GCGGATTTCG AGCATTCTGG GCGTCATTGA TGAAATTGCC
TTTCAGACCA ACCTCTTGGC GTTGAATGCC GGTGTCGAAG CGGCCCGCGC CGGTGAAGCA
GGCAAGGGTT TTGCGGTCGT CGCCCAGGAG GTCCGCGAAC TGGCGCAGCG CTCGGCTTCA
TCCGCCAAGG AAATCCGGCA GTTGATCAGC ACGTCCGGCA AGCAGGTTGA CCGTGGCGTG
GACCTTGTTG CCCAGACCGG CTCGGCTCTG GAGAATATCC TCAATCAGAT CCGTGCCATC
GATACCAATG TCACGGCGAT CGTTCACGGC ACCAAGGAAC AGACCACCGC GCTGCGGGAA
ATCAACAGTT CCGTCAATGT CATCGACCAG TCCACGCAAA AGAATGCAGC GATGGTTGAG
GAAACGACGG CGGCGGCATT CTCGCTTTCC AAGGATGCCG ATGATTTGTT CCAGATGGTT
GCTCAGTTCA AGACGTCTCC GTCTGGCTCT TCGTCATCCT ATTCTCGCGC CGCCTGA
|
|---|
| Protein sequence | MTIFGLGADA RSEVSALRKS QAVIEFSLDG TILDANDNFC RALGYSLAEI KGKHHRMFVD
ASEVETSDYR NFWEGLRQGK FQRAQYRRVA KDGRDVWIEA SYNPIMKGDR PYKVVKYATD
ITAVKLQALE DDAKLKAIST SMAVIEFTPD GKIITANENF CKAMGYSLTE LVGRHHSLFC
DKAYTSSTDY TSFWRDLAAG RTLANEFRRI AKDGRDVWIQ ASYNPIFDSR GKVYKVVKFA
TDVSSRMDAI SHLGAALKAL AGGDLTGTLN NMFVPTMEKL RIDFNEALSH LRKTMDGVAL
SARSIASSTN EIKEAANDLS RRTEAQAASV EESAASLEEV TTTVADSAKR AEEVGRLMEQ
TRLNTEQSSV IVRDAVVAMN EIEQSSGRIS SILGVIDEIA FQTNLLALNA GVEAARAGEA
GKGFAVVAQE VRELAQRSAS SAKEIRQLIS TSGKQVDRGV DLVAQTGSAL ENILNQIRAI
DTNVTAIVHG TKEQTTALRE INSSVNVIDQ STQKNAAMVE ETTAAAFSLS KDADDLFQMV
AQFKTSPSGS SSSYSRAA
|
|---|
| |