Gene Avi_1117 details

Gene Information

• Locus tag: Avi_1117
• Symbol: mcpA
• ID: 7386191
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 945192
• End bp: 947165
• Gene Length: 1974 bp
• Protein Length: 657 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643650596
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002548803
• Protein GI: 222147846
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.593573
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTTTTT TAGCCAATGC GAGCATTCGC ACGAAAATTC TGTCGCTCAT TGTCCCGGCC 
TGCATGATCG GCGTCGGCGG GCTGGGCTAC GCGGCCAGTA GTTATAAGTC CACGGATACC 
GAATATTCTG ATTTCATCGC AACCGACAGT ATCGCGGCAA GCCAGATGTA TCGGACAACG 
ACCTCTCTGC TGGCGATGGG ATACGGCGCC TATCAGCTTA TCGCATACGA CGTTGGTTCA 
CTCGATGTGG CTACCGTCAA GGCAGCCTAT GCAGATGCGG TTTCGACCGT ATTCAAGCGT 
CTGGATGCTG CCAAGGCGCT TGTGCCCGAG CTGTCAGGTG ATATCGACCA GTTTGCCAGC 
CGCGCCCGCG ATATTCAGGC CCTGACCGAC AAGGCGGTTC AATTGGTTGC CGATGGAAAG 
CGCGATGAAG CCAGAGCTCT TCTCGTCAAG GCGGATCCAT TGATTGCCAA ATGGCGTGAC 
GATCTTCGCG ACTGGAATAA CACCAATACG ACGGCCCTCC TGAAAAAAAG TGATGCACTG 
ACCGACCAGA CGAATTCAAC CATCCTGACG TCATTGACCA TTGTCGGCAG CGTTATGCTT 
ATGGCCATCA TCCTGGCTCT GTTCGTCACC TCGCGTGGCA TTATCGGTCC GATCGATAAG 
CTTCGCAGCC GGATGATAGC GCTGGCAAAC GGTGAAACGC AGCAGGAAAT ACCAGGCCTG 
GCGCGCAAGG ATGAGGTTGG TCAGATGGCT GCCGCTGTCG GCGTGTTCCG CGACAATGCC 
GTCGAGCGCG CCCGTCTGGA GCAGGAAACC GCGGCCAATC GCAGCCTCTC GGAAAAAGAG 
CGTCTGGAGC GCGAGGAGCA AAAGGCCAGG GAAGCGGCGG ATATCCAATT TGCGGTCGAC 
AATCTGGCAA ACGGGCTTTC GCATCTGTCC GATGGCGACG TCTCCTATCG GATCGGCCAG 
CCTTTCGTCG CCCATCTGGA TGGCGTGCGC GCCAGCTTCA ACAGCTCGGC TGAAAAATTG 
CAGGAAGCGC TGACCCATGT CGCCCAGAAT GCTAGCGCTA TCGATGCGGG TGCCAATGAA 
ATAAAGTCGG CAGCTGATGA TCTGGCCAAG CGGACTGAAC AGCAGGCAGC TTCCGTCGAG 
GAAACGGCCG CAGCCCTGGA ACAAATCACC ACCACGGTGA AGGATTCGAC CCGTCGTGCC 
CAGGAAGCGG GAACCCTGGT TTCGCGCACC AAGGCCGGCG CAGAGCAATC CGGTGAAGTG 
GTGCGCCGTG CCGTGATCGC CATGGAACAG ATCGAAAAGT CATCGGCTGA GATTTCCAAC 
ATCATCAGCG TCATCGATGA AATCGCCTTC CAGACCAATC TTCTGGCGCT GAATGCCGGT 
GTCGAGGCAG CGCGTGCCGG TGAAGCTGGC AAGGGCTTCG CAGTCGTTGC CCAGGAAGTG 
CGCGAGCTTG CCCAGCGTTC CGCCAATGCG GCAAAGGACA TCAAGGCGCT GATCACCACC 
TCCAACAGCC AGGTCCAGTC CGGTGTGCAG CTGGTGGGTG AAACTGGTAC CGCACTGCAA 
ACCATGGTGG CCGAAGTGCA GGAAATTAAC CGGCATGTCA GCGCTATCGT CGAGGCGGCC 
CACGAACAGT CTTCCGGTCT CCAGCAGATC AATACCGCTG TGAACCAGAT GGACCAGGAT 
ACCCAGAAGA ACGCGGCAAT GGTGGAGGAA TCCACGGCTG CAAGCCACGG CCTGGCAAGA 
GAAGTCGCCT CGCTGAACCA GTTGCTGTCG CAATTCAAGC TGTCTGGCGG CGGGCAAAGT 
GGGTTTAATT CTGGATCGGC CTATGCCGCC CCGGTTCGTC CCGCCCCCAT TCATCCCGCA 
CAGGCTCCGG TGGCTTCACC CGCCCGTGCG CTTGGCCGCA AGATCGCCAG TGCCTTTTCC 
GGCAAATCGT CAGCGACGGC TGCTGCTTCC GATCAGTCCT GGGAAGAGTT CTGA 

 

Protein sequence

MSFLANASIR TKILSLIVPA CMIGVGGLGY AASSYKSTDT EYSDFIATDS IAASQMYRTT 
TSLLAMGYGA YQLIAYDVGS LDVATVKAAY ADAVSTVFKR LDAAKALVPE LSGDIDQFAS 
RARDIQALTD KAVQLVADGK RDEARALLVK ADPLIAKWRD DLRDWNNTNT TALLKKSDAL 
TDQTNSTILT SLTIVGSVML MAIILALFVT SRGIIGPIDK LRSRMIALAN GETQQEIPGL 
ARKDEVGQMA AAVGVFRDNA VERARLEQET AANRSLSEKE RLEREEQKAR EAADIQFAVD 
NLANGLSHLS DGDVSYRIGQ PFVAHLDGVR ASFNSSAEKL QEALTHVAQN ASAIDAGANE 
IKSAADDLAK RTEQQAASVE ETAAALEQIT TTVKDSTRRA QEAGTLVSRT KAGAEQSGEV 
VRRAVIAMEQ IEKSSAEISN IISVIDEIAF QTNLLALNAG VEAARAGEAG KGFAVVAQEV 
RELAQRSANA AKDIKALITT SNSQVQSGVQ LVGETGTALQ TMVAEVQEIN RHVSAIVEAA 
HEQSSGLQQI NTAVNQMDQD TQKNAAMVEE STAASHGLAR EVASLNQLLS QFKLSGGGQS 
GFNSGSAYAA PVRPAPIHPA QAPVASPARA LGRKIASAFS GKSSATAAAS DQSWEEF