Gene Avi_1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1117 
SymbolmcpA 
ID7386191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp945192 
End bp947165 
Gene Length1974 bp 
Protein Length657 aa 
Translation table11 
GC content58% 
IMG OID643650596 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_002548803 
Protein GI222147846 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.593573 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTTTTT TAGCCAATGC GAGCATTCGC ACGAAAATTC TGTCGCTCAT TGTCCCGGCC 
TGCATGATCG GCGTCGGCGG GCTGGGCTAC GCGGCCAGTA GTTATAAGTC CACGGATACC
GAATATTCTG ATTTCATCGC AACCGACAGT ATCGCGGCAA GCCAGATGTA TCGGACAACG
ACCTCTCTGC TGGCGATGGG ATACGGCGCC TATCAGCTTA TCGCATACGA CGTTGGTTCA
CTCGATGTGG CTACCGTCAA GGCAGCCTAT GCAGATGCGG TTTCGACCGT ATTCAAGCGT
CTGGATGCTG CCAAGGCGCT TGTGCCCGAG CTGTCAGGTG ATATCGACCA GTTTGCCAGC
CGCGCCCGCG ATATTCAGGC CCTGACCGAC AAGGCGGTTC AATTGGTTGC CGATGGAAAG
CGCGATGAAG CCAGAGCTCT TCTCGTCAAG GCGGATCCAT TGATTGCCAA ATGGCGTGAC
GATCTTCGCG ACTGGAATAA CACCAATACG ACGGCCCTCC TGAAAAAAAG TGATGCACTG
ACCGACCAGA CGAATTCAAC CATCCTGACG TCATTGACCA TTGTCGGCAG CGTTATGCTT
ATGGCCATCA TCCTGGCTCT GTTCGTCACC TCGCGTGGCA TTATCGGTCC GATCGATAAG
CTTCGCAGCC GGATGATAGC GCTGGCAAAC GGTGAAACGC AGCAGGAAAT ACCAGGCCTG
GCGCGCAAGG ATGAGGTTGG TCAGATGGCT GCCGCTGTCG GCGTGTTCCG CGACAATGCC
GTCGAGCGCG CCCGTCTGGA GCAGGAAACC GCGGCCAATC GCAGCCTCTC GGAAAAAGAG
CGTCTGGAGC GCGAGGAGCA AAAGGCCAGG GAAGCGGCGG ATATCCAATT TGCGGTCGAC
AATCTGGCAA ACGGGCTTTC GCATCTGTCC GATGGCGACG TCTCCTATCG GATCGGCCAG
CCTTTCGTCG CCCATCTGGA TGGCGTGCGC GCCAGCTTCA ACAGCTCGGC TGAAAAATTG
CAGGAAGCGC TGACCCATGT CGCCCAGAAT GCTAGCGCTA TCGATGCGGG TGCCAATGAA
ATAAAGTCGG CAGCTGATGA TCTGGCCAAG CGGACTGAAC AGCAGGCAGC TTCCGTCGAG
GAAACGGCCG CAGCCCTGGA ACAAATCACC ACCACGGTGA AGGATTCGAC CCGTCGTGCC
CAGGAAGCGG GAACCCTGGT TTCGCGCACC AAGGCCGGCG CAGAGCAATC CGGTGAAGTG
GTGCGCCGTG CCGTGATCGC CATGGAACAG ATCGAAAAGT CATCGGCTGA GATTTCCAAC
ATCATCAGCG TCATCGATGA AATCGCCTTC CAGACCAATC TTCTGGCGCT GAATGCCGGT
GTCGAGGCAG CGCGTGCCGG TGAAGCTGGC AAGGGCTTCG CAGTCGTTGC CCAGGAAGTG
CGCGAGCTTG CCCAGCGTTC CGCCAATGCG GCAAAGGACA TCAAGGCGCT GATCACCACC
TCCAACAGCC AGGTCCAGTC CGGTGTGCAG CTGGTGGGTG AAACTGGTAC CGCACTGCAA
ACCATGGTGG CCGAAGTGCA GGAAATTAAC CGGCATGTCA GCGCTATCGT CGAGGCGGCC
CACGAACAGT CTTCCGGTCT CCAGCAGATC AATACCGCTG TGAACCAGAT GGACCAGGAT
ACCCAGAAGA ACGCGGCAAT GGTGGAGGAA TCCACGGCTG CAAGCCACGG CCTGGCAAGA
GAAGTCGCCT CGCTGAACCA GTTGCTGTCG CAATTCAAGC TGTCTGGCGG CGGGCAAAGT
GGGTTTAATT CTGGATCGGC CTATGCCGCC CCGGTTCGTC CCGCCCCCAT TCATCCCGCA
CAGGCTCCGG TGGCTTCACC CGCCCGTGCG CTTGGCCGCA AGATCGCCAG TGCCTTTTCC
GGCAAATCGT CAGCGACGGC TGCTGCTTCC GATCAGTCCT GGGAAGAGTT CTGA
 
Protein sequence
MSFLANASIR TKILSLIVPA CMIGVGGLGY AASSYKSTDT EYSDFIATDS IAASQMYRTT 
TSLLAMGYGA YQLIAYDVGS LDVATVKAAY ADAVSTVFKR LDAAKALVPE LSGDIDQFAS
RARDIQALTD KAVQLVADGK RDEARALLVK ADPLIAKWRD DLRDWNNTNT TALLKKSDAL
TDQTNSTILT SLTIVGSVML MAIILALFVT SRGIIGPIDK LRSRMIALAN GETQQEIPGL
ARKDEVGQMA AAVGVFRDNA VERARLEQET AANRSLSEKE RLEREEQKAR EAADIQFAVD
NLANGLSHLS DGDVSYRIGQ PFVAHLDGVR ASFNSSAEKL QEALTHVAQN ASAIDAGANE
IKSAADDLAK RTEQQAASVE ETAAALEQIT TTVKDSTRRA QEAGTLVSRT KAGAEQSGEV
VRRAVIAMEQ IEKSSAEISN IISVIDEIAF QTNLLALNAG VEAARAGEAG KGFAVVAQEV
RELAQRSANA AKDIKALITT SNSQVQSGVQ LVGETGTALQ TMVAEVQEIN RHVSAIVEAA
HEQSSGLQQI NTAVNQMDQD TQKNAAMVEE STAASHGLAR EVASLNQLLS QFKLSGGGQS
GFNSGSAYAA PVRPAPIHPA QAPVASPARA LGRKIASAFS GKSSATAAAS DQSWEEF