More than 300 homologs were found in PanDaTox collection
for query gene TM1040_0839 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_0359  methyl-accepting chemotaxis sensory transducer  70.18 
 
 
927 aa  1173    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0839  methyl-accepting chemotaxis sensory transducer  100 
 
 
927 aa  1825    Ruegeria sp. TM1040  Bacteria  normal  0.587759  normal  0.752939 
 
 
-
 
NC_008043  TM1040_3179  methyl-accepting chemotaxis sensory transducer  44.97 
 
 
885 aa  577  1.0000000000000001e-163  Ruegeria sp. TM1040  Bacteria  normal  normal  0.498273 
 
 
-
 
NC_008044  TM1040_2453  methyl-accepting chemotaxis sensory transducer  59.54 
 
 
788 aa  391  1e-107  Ruegeria sp. TM1040  Bacteria  normal  0.925334  normal  0.122382 
 
 
-
 
NC_008044  TM1040_0984  methyl-accepting chemotaxis sensory transducer  55.79 
 
 
608 aa  384  1e-105  Ruegeria sp. TM1040  Bacteria  normal  0.0666136  normal  0.983928 
 
 
-
 
NC_008043  TM1040_3209  methyl-accepting chemotaxis sensory transducer  51.43 
 
 
782 aa  378  1e-103  Ruegeria sp. TM1040  Bacteria  normal  0.684679  normal 
 
 
-
 
NC_008043  TM1040_3177  methyl-accepting chemotaxis sensory transducer  48.92 
 
 
749 aa  352  1e-95  Ruegeria sp. TM1040  Bacteria  normal  0.726311  normal 
 
 
-
 
NC_008044  TM1040_1383  methyl-accepting chemotaxis sensory transducer  56.44 
 
 
705 aa  352  1e-95  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2002  methyl-accepting chemotaxis sensory transducer  60.52 
 
 
530 aa  348  3e-94  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3620  methyl-accepting chemotaxis sensory transducer  51.16 
 
 
677 aa  342  2e-92  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0125911 
 
 
-
 
NC_009636  Smed_0051  methyl-accepting chemotaxis sensory transducer  50.49 
 
 
796 aa  340  7e-92  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.000000874578 
 
 
-
 
NC_010581  Bind_1798  methyl-accepting chemotaxis sensory transducer  49.63 
 
 
615 aa  338  1.9999999999999998e-91  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.371991  normal 
 
 
-
 
NC_011369  Rleg2_0052  methyl-accepting chemotaxis sensory transducer  48.46 
 
 
778 aa  334  4e-90  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0947231 
 
 
-
 
NC_008043  TM1040_3194  methyl-accepting chemotaxis sensory transducer  52.87 
 
 
614 aa  333  9e-90  Ruegeria sp. TM1040  Bacteria  normal  0.311641  normal 
 
 
-
 
NC_011369  Rleg2_0185  methyl-accepting chemotaxis sensory transducer  48.68 
 
 
669 aa  332  2e-89  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0214  methyl-accepting chemotaxis sensory transducer  46.1 
 
 
663 aa  330  8e-89  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.287216 
 
 
-
 
NC_010338  Caul_1141  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  56.3 
 
 
501 aa  323  8e-87  Caulobacter sp. K31  Bacteria  normal  0.489477  hitchhiker  0.000166409 
 
 
-
 
NC_009636  Smed_0489  methyl-accepting chemotaxis sensory transducer  44.59 
 
 
698 aa  322  3e-86  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.000832175  normal 
 
 
-
 
NC_011989  Avi_2608  methyl-accepting chemotaxis protein  46.22 
 
 
655 aa  320  6e-86  Agrobacterium vitis S4  Bacteria  normal  0.445883  n/a   
 
 
-
 
NC_010338  Caul_2177  methyl-accepting chemotaxis sensory transducer  48.27 
 
 
602 aa  320  1e-85  Caulobacter sp. K31  Bacteria  normal  0.180362  normal  0.483778 
 
 
-
 
NC_010338  Caul_0276  methyl-accepting chemotaxis sensory transducer  46.47 
 
 
657 aa  318  4e-85  Caulobacter sp. K31  Bacteria  normal  0.461968  normal  0.560518 
 
 
-
 
NC_011666  Msil_1449  methyl-accepting chemotaxis sensory transducer  48.32 
 
 
647 aa  315  1.9999999999999998e-84  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010338  Caul_0222  methyl-accepting chemotaxis sensory transducer  50.81 
 
 
642 aa  311  5e-83  Caulobacter sp. K31  Bacteria  normal  0.414219  normal  0.376796 
 
 
-
 
NC_010338  Caul_0236  methyl-accepting chemotaxis sensory transducer  48.68 
 
 
660 aa  310  5.9999999999999995e-83  Caulobacter sp. K31  Bacteria  normal  0.105118  normal 
 
 
-
 
NC_007802  Jann_3360  methyl-accepting chemotaxis sensory transducer  47.39 
 
 
648 aa  310  9e-83  Jannaschia sp. CCS1  Bacteria  normal  0.59059  normal 
 
 
-
 
NC_011989  Avi_0988  methyl-accepting chemotaxis protein  46.47 
 
 
695 aa  310  1.0000000000000001e-82  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2144  methyl-accepting chemotaxis sensory transducer  55.62 
 
 
556 aa  310  1.0000000000000001e-82  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3729  methyl-accepting chemotaxis protein  47.17 
 
 
644 aa  307  5.0000000000000004e-82  Agrobacterium vitis S4  Bacteria  normal  0.554142  n/a   
 
 
-
 
NC_011370  Rleg2_6126  methyl-accepting chemotaxis sensory transducer  46.59 
 
 
650 aa  307  6e-82  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.375381  normal  0.0878449 
 
 
-
 
NC_011989  Avi_1208  methyl-accepting chemotaxis protein  47.03 
 
 
604 aa  307  6e-82  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0980  methyl-accepting chemotaxis protein  45.37 
 
 
611 aa  305  2.0000000000000002e-81  Agrobacterium vitis S4  Bacteria  normal  0.442512  n/a   
 
 
-
 
NC_010335  Caul_5142  methyl-accepting chemotaxis sensory transducer  46.5 
 
 
599 aa  305  2.0000000000000002e-81  Caulobacter sp. K31  Bacteria  normal  0.367406  normal  0.838811 
 
 
-
 
NC_011365  Gdia_3445  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.76 
 
 
746 aa  305  2.0000000000000002e-81  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.2502  normal 
 
 
-
 
NC_011989  Avi_2928  methyl-accepting chemotaxis protein  45.57 
 
 
792 aa  305  3.0000000000000004e-81  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5354  methyl-accepting chemotaxis sensory transducer  49.37 
 
 
714 aa  304  6.000000000000001e-81  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.642158  normal  0.0994281 
 
 
-
 
NC_011989  Avi_2927  methyl-accepting chemotaxis protein  48.63 
 
 
730 aa  304  6.000000000000001e-81  Agrobacterium vitis S4  Bacteria  normal  0.0257741  n/a   
 
 
-
 
NC_011988  Avi_5554  methyl-accepting chemotaxis protein  47.26 
 
 
653 aa  302  1e-80  Agrobacterium vitis S4  Bacteria  normal  0.0672502  n/a   
 
 
-
 
NC_011368  Rleg2_5372  methyl-accepting chemotaxis sensory transducer  43.15 
 
 
627 aa  303  1e-80  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.756404 
 
 
-
 
NC_011989  Avi_1200  methyl-accepting chemotaxis protein  47.06 
 
 
728 aa  301  4e-80  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5151  methyl-accepting chemotaxis protein  46.57 
 
 
776 aa  301  4e-80  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2051  methyl-accepting chemotaxis sensory transducer  47.87 
 
 
717 aa  301  4e-80  Sinorhizobium medicae WSM419  Bacteria  normal  0.245091  normal  0.347836 
 
 
-
 
NC_009484  Acry_2590  methyl-accepting chemotaxis sensory transducer  49.75 
 
 
642 aa  300  6e-80  Acidiphilium cryptum JF-5  Bacteria  normal  0.156907  n/a   
 
 
-
 
NC_011984  Avi_9088  methyl-accepting chemotaxis protein  48.14 
 
 
761 aa  299  1e-79  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0626  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.81 
 
 
726 aa  299  2e-79  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4292  methyl-accepting chemotaxis sensory transducer  53.05 
 
 
535 aa  298  3e-79  Caulobacter sp. K31  Bacteria  normal  normal  0.432431 
 
 
-
 
NC_010338  Caul_1355  methyl-accepting chemotaxis sensory transducer  54.3 
 
 
494 aa  298  4e-79  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5069  methyl-accepting chemotaxis sensory transducer  48.52 
 
 
714 aa  297  5e-79  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.277036  normal 
 
 
-
 
NC_011989  Avi_1117  methyl-accepting chemotaxis protein  41.85 
 
 
657 aa  296  1e-78  Agrobacterium vitis S4  Bacteria  normal  0.593573  n/a   
 
 
-
 
NC_011989  Avi_1201  methyl-accepting chemotaxis protein  45.45 
 
 
728 aa  295  3e-78  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4113  methyl-accepting chemotaxis protein  46.02 
 
 
778 aa  295  3e-78  Agrobacterium vitis S4  Bacteria  normal  0.433818  n/a   
 
 
-
 
NC_008044  TM1040_1027  methyl-accepting chemotaxis sensory transducer  46.97 
 
 
795 aa  295  3e-78  Ruegeria sp. TM1040  Bacteria  normal  normal  0.551962 
 
 
-
 
NC_011989  Avi_0452  methyl-accepting chemotaxis protein  45.3 
 
 
622 aa  295  3e-78  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0606  methyl-accepting chemotaxis sensory transducer  45.48 
 
 
644 aa  295  3e-78  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.307243 
 
 
-
 
NC_010338  Caul_2435  methyl-accepting chemotaxis sensory transducer  51.21 
 
 
507 aa  294  4e-78  Caulobacter sp. K31  Bacteria  normal  0.264745  normal  0.414024 
 
 
-
 
NC_009484  Acry_0520  methyl-accepting chemotaxis sensory transducer  48.01 
 
 
636 aa  295  4e-78  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0943  methyl-accepting chemotaxis sensory transducer with Cache sensor  46.11 
 
 
793 aa  294  6e-78  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.27721  normal 
 
 
-
 
NC_010581  Bind_0110  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.94 
 
 
588 aa  292  2e-77  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.885184  normal  0.0508963 
 
 
-
 
NC_009484  Acry_2705  methyl-accepting chemotaxis sensory transducer  45.39 
 
 
509 aa  291  3e-77  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4811  methyl-accepting chemotaxis sensory transducer  49.08 
 
 
625 aa  290  7e-77  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.327513  normal 
 
 
-
 
NC_011369  Rleg2_2181  methyl-accepting chemotaxis sensory transducer  46.96 
 
 
606 aa  290  9e-77  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.440189  normal  0.953277 
 
 
-
 
NC_012848  Rleg_4670  methyl-accepting chemotaxis sensory transducer  47.01 
 
 
625 aa  290  1e-76  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.817515 
 
 
-
 
NC_011989  Avi_4013  methyl-accepting chemotaxis protein  42.2 
 
 
756 aa  290  1e-76  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_2464  methyl-accepting chemotaxis sensory transducer with Cache sensor  50.51 
 
 
605 aa  290  1e-76  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5092  methyl-accepting chemotaxis sensory transducer  42.99 
 
 
626 aa  290  1e-76  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.359668  normal  0.0114189 
 
 
-
 
NC_011989  Avi_0806  methyl-accepting chemotaxis protein  45.27 
 
 
842 aa  289  2e-76  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_0994  methyl-accepting chemotaxis protein  46.98 
 
 
649 aa  288  2.9999999999999996e-76  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_0563  methyl-accepting chemotaxis sensory transducer  47.92 
 
 
645 aa  288  2.9999999999999996e-76  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.73856 
 
 
-
 
NC_011989  Avi_2775  methyl-accepting chemotaxis protein  53.54 
 
 
558 aa  288  2.9999999999999996e-76  Agrobacterium vitis S4  Bacteria  normal  0.536477  n/a   
 
 
-
 
NC_011365  Gdia_0173  methyl-accepting chemotaxis sensory transducer  50.3 
 
 
545 aa  286  9e-76  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.074609 
 
 
-
 
NC_012850  Rleg_3005  methyl-accepting chemotaxis sensory transducer  44.44 
 
 
665 aa  286  1.0000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3923  methyl-accepting chemotaxis protein  44.42 
 
 
843 aa  285  2.0000000000000002e-75  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0697  methyl-accepting chemotaxis sensory transducer  45.73 
 
 
610 aa  284  7.000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_1613  methyl-accepting chemotaxis sensory transducer  47.96 
 
 
603 aa  283  8.000000000000001e-75  Sinorhizobium medicae WSM419  Bacteria  normal  0.183078  normal  0.160096 
 
 
-
 
NC_012854  Rleg_6402  methyl-accepting chemotaxis sensory transducer  46.32 
 
 
688 aa  283  8.000000000000001e-75  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.579482  normal  0.320846 
 
 
-
 
NC_011368  Rleg2_4524  methyl-accepting chemotaxis sensory transducer  46.05 
 
 
661 aa  283  9e-75  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.66296 
 
 
-
 
NC_012850  Rleg_0581  methyl-accepting chemotaxis sensory transducer with Cache sensor  41.27 
 
 
607 aa  283  1e-74  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.893675 
 
 
-
 
NC_012850  Rleg_0401  methyl-accepting chemotaxis sensory transducer  44.15 
 
 
615 aa  282  2e-74  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.000192098 
 
 
-
 
NC_011369  Rleg2_0368  methyl-accepting chemotaxis sensory transducer  43.91 
 
 
843 aa  283  2e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0662296 
 
 
-
 
NC_009636  Smed_0305  methyl-accepting chemotaxis sensory transducer  43.24 
 
 
841 aa  281  4e-74  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2791  methyl-accepting chemotaxis protein  51.28 
 
 
622 aa  281  4e-74  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4686  methyl-accepting chemotaxis sensory transducer  46.6 
 
 
601 aa  280  8e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.115608  normal 
 
 
-
 
NC_011369  Rleg2_0640  methyl-accepting chemotaxis sensory transducer  44.58 
 
 
604 aa  280  8e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.122515  normal  0.297773 
 
 
-
 
NC_011365  Gdia_2195  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  52.75 
 
 
577 aa  280  8e-74  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0400  methyl-accepting chemotaxis sensory transducer  43.65 
 
 
843 aa  280  1e-73  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.00170819 
 
 
-
 
NC_011369  Rleg2_0537  methyl-accepting chemotaxis sensory transducer  41.82 
 
 
605 aa  279  2e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.180661 
 
 
-
 
NC_011369  Rleg2_0369  methyl-accepting chemotaxis sensory transducer  44.53 
 
 
615 aa  278  2e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00881781 
 
 
-
 
NC_012848  Rleg_4978  methyl-accepting chemotaxis sensory transducer  42.75 
 
 
846 aa  278  3e-73  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.23325  normal 
 
 
-
 
NC_007794  Saro_0852  methyl-accepting chemotaxis sensory transducer  44.14 
 
 
593 aa  278  5e-73  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.278676  n/a   
 
 
-
 
NC_011989  Avi_0996  methyl-accepting chemotaxis protein  48.45 
 
 
647 aa  278  5e-73  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2860  methyl-accepting chemotaxis protein  43.12 
 
 
668 aa  277  7e-73  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0580  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.55 
 
 
606 aa  275  2.0000000000000002e-72  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.237889  normal 
 
 
-
 
NC_009428  Rsph17025_1790  methyl-accepting chemotaxis sensory transducer  51.34 
 
 
694 aa  275  2.0000000000000002e-72  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1104  methyl-accepting chemotaxis sensory transducer  58.11 
 
 
792 aa  274  4.0000000000000004e-72  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3647  methyl-accepting chemotaxis protein  43.55 
 
 
680 aa  274  5.000000000000001e-72  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3632  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  52.29 
 
 
592 aa  274  6e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.377399 
 
 
-
 
NC_011369  Rleg2_1998  methyl-accepting chemotaxis sensory transducer  41.51 
 
 
624 aa  274  7e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.128789  normal  0.773053 
 
 
-
 
NC_010338  Caul_1387  methyl-accepting chemotaxis sensory transducer  46.89 
 
 
615 aa  273  8.000000000000001e-72  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_4775  methyl-accepting chemotaxis sensory transducer  46.68 
 
 
842 aa  273  1e-71  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.507772  normal 
 
 
-
 
NC_007493  RSP_2440  methyl accepting chemotaxis protein  57.82 
 
 
770 aa  272  2e-71  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4091  methyl-accepting chemotaxis protein  53.07 
 
 
592 aa  273  2e-71  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
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