Gene Avi_3647 details

Gene Information

• Locus tag: Avi_3647
• Symbol: mclA
• ID: 7388057
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 3028147
• End bp: 3030189
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643652455
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002550637
• Protein GI: 222149680
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTTC TATCCCGTTT CGGGCTGGTC GGGACGATCA CTGTGGTGAC GACCCTGATA 
TTGGTTGTAT CTCTGGGCGC TGTTGCCTGG ACGATTTCGC GGCAGGTTCA TGAGCGCGTG 
ACGCAGCAGG CCATCGACAG CCAGAACAGC AGCCTGCGGG TCGCGGCCAC GTTGCTGGAG 
CGCGATGTGC CTGGTGTGAA GGTCAGCTGG GGTCGGGATG GCAATGTTGA ACGCATTTCG 
GCGCAGACGC TGCCGGCGCA ATTTGCCAAT CATGACACGA TCGATTCCAT TGGCCGGATG 
ACGGGCCAGA CGGCGACGCT GTTTACCCTG GATGAAGCGA CCAAGGGTTA TATTCGCCGC 
ACAACCAATA TCATCAAGCC GGATGGCCAG CGCGCCGTCG GCACGCCGCT CGATCCAACG 
GGTGCCGTCT ATTCGGCCCT CGTCAAGGGT GAGACGTATC GTGGTCAGGC CGCCATTCTC 
GGCACGGATT ACTATACAAT CTACAAGCCG ATCATCAATT CTTCCGGTTC TGTGATCGGC 
ATTCTCTACG CCGGTGTGCG TGTTGCCGAA ATTGCCGGTA TCAGCGATCA GATGGCGCAA 
GCCGTGGCGA TTACGGCGGG TATCGCCTTG CTGGTTTCCC TCCTGCTGAT GGTGTTCATC 
ACCCGCAAGA CCATGCGCCC GATTCCGGAA CTGACAGCGG CGGCCTCCAG TCTTGCCGAT 
GGCCGGACCG ATGTTGAAGT TCCCCATCAG AGCTTGCGCA ACGAGATCGG TGCTCTGGCC 
CGGGCGCTGG AAGTTTTCCG CGAAGATGCG CTTAAGAAGC TGCAACTGGA ACAGGACGCA 
AACGAAACGC GGGCGCGCAA CGACCGGGAA CGGGCCGAGC GTGAGGCTGA GAAGGATGCG 
GATGCCGCCA ATATCCGAAA CTGTGCCGAT ATGCTGGCGG TTGCCATGAA CCGCCTGAGC 
AGTGGCGACC TGACGACGCG GATCGACCAG TCGTTTATTC CTGAACTTGA ACCGCTCCGG 
GTCGATTTCA ACAATTCGGT CAACAATCTC AGCCTGGCCT TCGCCCGTTT GCGCAACGAG 
GCGATGTCGG TCGAGGCCAG CGGTAATGAA ATGCGCAGCG CCGCAGGCGC GCTGGCCAGC 
CGCACCGAGC AGCAGGCAGC CTCTCTGGAA GAGACCTCGG CAGCGCTGGA ACAGGTCACC 
GGCACAGTGC GCAGCGCCGC CGACCGTGCT CAACAGGCCG CGGCTCTCGC CTCCGATGCT 
CAGGTCAGCA CAGAAGGCTC GTCCAAGGTG GTGGCGGATG CGGTGTCGGC CATGGGCCGG 
ATCGAACAGG CCTCGAGCGA GATTTCCAAG ATCATCAATG TCATCGATGA AATCGCTTTC 
CAGACCAATC TTCTCGCGCT CAATGCCGGT GTCGAAGCAG CACGGGCCGG AGAGGCGGGC 
AAGGGCTTTG CCGTGGTTGC TCAGGAAGTG CGCGAACTGG CGCAGCGCTC CGCCAATGCC 
GCCAAGGATA TCAAGGCGTT GATCAGCAAG TCGGGGACGG AAGTGGCTGG TGGCGTCAGG 
CTGGTGCGCG AAACCGGCGA TGCGCTTGGA GCGATTTCCC AACAGGTATC GATGATCAAT 
GGCCTGATTG CCGAGATTGC GACGTCTTCG CGCGAACAGA GCACCGGCTT GCAGGAGATC 
AACACCTCCG TCAACCATAT GGACCAGTTC ACCCAGAAAA ACGCCGCCAT GGTGGAAGAA 
ACCACCGCCG TCACCCACAA GCTCGCCGAA AGCGCCACCA CATTGGTCAG CCTGATTGCC 
GAGTTCAAGG TGCCGGGTGA GGCCGCATCC TGGGCGCCAA ACCATCAGCC AGCCCCTGCG 
TCACGGGCGC CTGCCGCCAA GCCTTTGGCC GCATCGCGCA TCAAACCTGC CCAGCCCAGC 
TCCCGCCCTG TCGGTTCTCC GGCGCGCTCG ATGATGGGCA AGCTGGCCAG CGCCTTCACT 
GGTGGCTCAT CTGCCGCTGC GGCCTCCAGC GCCTCCGGCG GCAACAATTG GGAAGAGTTT 
TAA 

 

Protein sequence

MKFLSRFGLV GTITVVTTLI LVVSLGAVAW TISRQVHERV TQQAIDSQNS SLRVAATLLE 
RDVPGVKVSW GRDGNVERIS AQTLPAQFAN HDTIDSIGRM TGQTATLFTL DEATKGYIRR 
TTNIIKPDGQ RAVGTPLDPT GAVYSALVKG ETYRGQAAIL GTDYYTIYKP IINSSGSVIG 
ILYAGVRVAE IAGISDQMAQ AVAITAGIAL LVSLLLMVFI TRKTMRPIPE LTAAASSLAD 
GRTDVEVPHQ SLRNEIGALA RALEVFREDA LKKLQLEQDA NETRARNDRE RAEREAEKDA 
DAANIRNCAD MLAVAMNRLS SGDLTTRIDQ SFIPELEPLR VDFNNSVNNL SLAFARLRNE 
AMSVEASGNE MRSAAGALAS RTEQQAASLE ETSAALEQVT GTVRSAADRA QQAAALASDA 
QVSTEGSSKV VADAVSAMGR IEQASSEISK IINVIDEIAF QTNLLALNAG VEAARAGEAG 
KGFAVVAQEV RELAQRSANA AKDIKALISK SGTEVAGGVR LVRETGDALG AISQQVSMIN 
GLIAEIATSS REQSTGLQEI NTSVNHMDQF TQKNAAMVEE TTAVTHKLAE SATTLVSLIA 
EFKVPGEAAS WAPNHQPAPA SRAPAAKPLA ASRIKPAQPS SRPVGSPARS MMGKLASAFT 
GGSSAAAASS ASGGNNWEEF