More than 300 homologs were found in PanDaTox collection
for query gene TM1040_2002 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008044  TM1040_2002  methyl-accepting chemotaxis sensory transducer  100 
 
 
530 aa  1063    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4292  methyl-accepting chemotaxis sensory transducer  41.44 
 
 
535 aa  335  1e-90  Caulobacter sp. K31  Bacteria  normal  normal  0.432431 
 
 
-
 
NC_008044  TM1040_0359  methyl-accepting chemotaxis sensory transducer  60.32 
 
 
927 aa  332  1e-89  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0839  methyl-accepting chemotaxis sensory transducer  60.32 
 
 
927 aa  331  2e-89  Ruegeria sp. TM1040  Bacteria  normal  0.587759  normal  0.752939 
 
 
-
 
NC_008044  TM1040_0984  methyl-accepting chemotaxis sensory transducer  56.48 
 
 
608 aa  327  3e-88  Ruegeria sp. TM1040  Bacteria  normal  0.0666136  normal  0.983928 
 
 
-
 
NC_008043  TM1040_3209  methyl-accepting chemotaxis sensory transducer  55.18 
 
 
782 aa  321  1.9999999999999998e-86  Ruegeria sp. TM1040  Bacteria  normal  0.684679  normal 
 
 
-
 
NC_008044  TM1040_2453  methyl-accepting chemotaxis sensory transducer  57.78 
 
 
788 aa  309  6.999999999999999e-83  Ruegeria sp. TM1040  Bacteria  normal  0.925334  normal  0.122382 
 
 
-
 
NC_010338  Caul_0276  methyl-accepting chemotaxis sensory transducer  55.3 
 
 
657 aa  306  8.000000000000001e-82  Caulobacter sp. K31  Bacteria  normal  0.461968  normal  0.560518 
 
 
-
 
NC_008044  TM1040_1383  methyl-accepting chemotaxis sensory transducer  57.96 
 
 
705 aa  305  2.0000000000000002e-81  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0051  methyl-accepting chemotaxis sensory transducer  50.75 
 
 
796 aa  301  1e-80  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.000000874578 
 
 
-
 
NC_008043  TM1040_3179  methyl-accepting chemotaxis sensory transducer  57.88 
 
 
885 aa  293  5e-78  Ruegeria sp. TM1040  Bacteria  normal  normal  0.498273 
 
 
-
 
NC_010581  Bind_1798  methyl-accepting chemotaxis sensory transducer  49.08 
 
 
615 aa  292  1e-77  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.371991  normal 
 
 
-
 
NC_011666  Msil_1449  methyl-accepting chemotaxis sensory transducer  53.74 
 
 
647 aa  290  5.0000000000000004e-77  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008043  TM1040_3194  methyl-accepting chemotaxis sensory transducer  53.43 
 
 
614 aa  290  5.0000000000000004e-77  Ruegeria sp. TM1040  Bacteria  normal  0.311641  normal 
 
 
-
 
NC_010581  Bind_3620  methyl-accepting chemotaxis sensory transducer  47.34 
 
 
677 aa  289  1e-76  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.0125911 
 
 
-
 
NC_010338  Caul_1141  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  52.72 
 
 
501 aa  286  8e-76  Caulobacter sp. K31  Bacteria  normal  0.489477  hitchhiker  0.000166409 
 
 
-
 
NC_010338  Caul_2177  methyl-accepting chemotaxis sensory transducer  53.02 
 
 
602 aa  286  9e-76  Caulobacter sp. K31  Bacteria  normal  0.180362  normal  0.483778 
 
 
-
 
NC_010338  Caul_3214  methyl-accepting chemotaxis sensory transducer  39.84 
 
 
532 aa  284  2.0000000000000002e-75  Caulobacter sp. K31  Bacteria  normal  normal  0.409706 
 
 
-
 
NC_008043  TM1040_3177  methyl-accepting chemotaxis sensory transducer  52.79 
 
 
749 aa  285  2.0000000000000002e-75  Ruegeria sp. TM1040  Bacteria  normal  0.726311  normal 
 
 
-
 
NC_010338  Caul_0236  methyl-accepting chemotaxis sensory transducer  50.33 
 
 
660 aa  281  3e-74  Caulobacter sp. K31  Bacteria  normal  0.105118  normal 
 
 
-
 
NC_011369  Rleg2_0052  methyl-accepting chemotaxis sensory transducer  47.25 
 
 
778 aa  280  4e-74  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0947231 
 
 
-
 
NC_010338  Caul_0222  methyl-accepting chemotaxis sensory transducer  51.18 
 
 
642 aa  276  7e-73  Caulobacter sp. K31  Bacteria  normal  0.414219  normal  0.376796 
 
 
-
 
NC_009484  Acry_2705  methyl-accepting chemotaxis sensory transducer  47.92 
 
 
509 aa  276  1.0000000000000001e-72  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0173  methyl-accepting chemotaxis sensory transducer  49.19 
 
 
545 aa  273  5.000000000000001e-72  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.074609 
 
 
-
 
NC_010335  Caul_5142  methyl-accepting chemotaxis sensory transducer  51.01 
 
 
599 aa  272  1e-71  Caulobacter sp. K31  Bacteria  normal  0.367406  normal  0.838811 
 
 
-
 
NC_009484  Acry_2144  methyl-accepting chemotaxis sensory transducer  51.49 
 
 
556 aa  272  1e-71  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0110  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.33 
 
 
588 aa  271  2e-71  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.885184  normal  0.0508963 
 
 
-
 
NC_007802  Jann_3360  methyl-accepting chemotaxis sensory transducer  48.79 
 
 
648 aa  270  4e-71  Jannaschia sp. CCS1  Bacteria  normal  0.59059  normal 
 
 
-
 
NC_011369  Rleg2_0185  methyl-accepting chemotaxis sensory transducer  43.46 
 
 
669 aa  270  5e-71  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_2590  methyl-accepting chemotaxis sensory transducer  53.85 
 
 
642 aa  270  5.9999999999999995e-71  Acidiphilium cryptum JF-5  Bacteria  normal  0.156907  n/a   
 
 
-
 
NC_011989  Avi_2928  methyl-accepting chemotaxis protein  51.38 
 
 
792 aa  270  5.9999999999999995e-71  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0520  methyl-accepting chemotaxis sensory transducer  52.01 
 
 
636 aa  269  8.999999999999999e-71  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_4524  methyl-accepting chemotaxis sensory transducer  47.46 
 
 
661 aa  269  1e-70  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.66296 
 
 
-
 
NC_010338  Caul_1355  methyl-accepting chemotaxis sensory transducer  45.51 
 
 
494 aa  267  2.9999999999999995e-70  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_012854  Rleg_6402  methyl-accepting chemotaxis sensory transducer  47.46 
 
 
688 aa  267  5e-70  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.579482  normal  0.320846 
 
 
-
 
NC_012850  Rleg_0214  methyl-accepting chemotaxis sensory transducer  51.85 
 
 
663 aa  266  8e-70  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.287216 
 
 
-
 
NC_011989  Avi_2927  methyl-accepting chemotaxis protein  48.05 
 
 
730 aa  265  2e-69  Agrobacterium vitis S4  Bacteria  normal  0.0257741  n/a   
 
 
-
 
NC_011989  Avi_0452  methyl-accepting chemotaxis protein  50.34 
 
 
622 aa  265  2e-69  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0489  methyl-accepting chemotaxis sensory transducer  50.92 
 
 
698 aa  264  3e-69  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.000832175  normal 
 
 
-
 
NC_011989  Avi_2791  methyl-accepting chemotaxis protein  49.01 
 
 
622 aa  264  3e-69  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5151  methyl-accepting chemotaxis protein  48.49 
 
 
776 aa  263  4e-69  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0599  methyl-accepting chemotaxis sensory transducer  36.89 
 
 
537 aa  264  4e-69  Acidiphilium cryptum JF-5  Bacteria  normal  0.765764  n/a   
 
 
-
 
NC_011989  Avi_1547  methyl-accepting chemotaxis protein  50.33 
 
 
635 aa  261  2e-68  Agrobacterium vitis S4  Bacteria  normal  0.0672502  n/a   
 
 
-
 
NC_008044  TM1040_1027  methyl-accepting chemotaxis sensory transducer  52.09 
 
 
795 aa  260  3e-68  Ruegeria sp. TM1040  Bacteria  normal  normal  0.551962 
 
 
-
 
NC_011365  Gdia_3445  methyl-accepting chemotaxis sensory transducer with Cache sensor  46.46 
 
 
746 aa  260  4e-68  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.2502  normal 
 
 
-
 
NC_010338  Caul_1387  methyl-accepting chemotaxis sensory transducer  52.68 
 
 
615 aa  259  7e-68  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3632  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.18 
 
 
592 aa  259  1e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.377399 
 
 
-
 
NC_011989  Avi_0793  methyl-accepting chemotaxis protein  50.69 
 
 
740 aa  259  1e-67  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0943  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.69 
 
 
793 aa  258  2e-67  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.27721  normal 
 
 
-
 
NC_011989  Avi_0988  methyl-accepting chemotaxis protein  47.26 
 
 
695 aa  257  3e-67  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2051  methyl-accepting chemotaxis sensory transducer  45.4 
 
 
717 aa  256  6e-67  Sinorhizobium medicae WSM419  Bacteria  normal  0.245091  normal  0.347836 
 
 
-
 
NC_011369  Rleg2_0626  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.56 
 
 
726 aa  256  6e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2435  methyl-accepting chemotaxis sensory transducer  47.74 
 
 
507 aa  256  7e-67  Caulobacter sp. K31  Bacteria  normal  0.264745  normal  0.414024 
 
 
-
 
NC_011989  Avi_1208  methyl-accepting chemotaxis protein  46.59 
 
 
604 aa  256  7e-67  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_4670  methyl-accepting chemotaxis sensory transducer  49.84 
 
 
625 aa  256  8e-67  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.817515 
 
 
-
 
NC_011368  Rleg2_4686  methyl-accepting chemotaxis sensory transducer  51.19 
 
 
601 aa  256  9e-67  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.115608  normal 
 
 
-
 
NC_011984  Avi_9088  methyl-accepting chemotaxis protein  49.83 
 
 
761 aa  255  1.0000000000000001e-66  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_0098  methyl-accepting chemotaxis sensory transducer  50.53 
 
 
665 aa  255  1.0000000000000001e-66  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.713215  normal 
 
 
-
 
NC_011369  Rleg2_0083  methyl-accepting chemotaxis sensory transducer  50.53 
 
 
665 aa  254  2.0000000000000002e-66  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0972557  normal  0.565594 
 
 
-
 
NC_012850  Rleg_3921  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  48.7 
 
 
586 aa  254  3e-66  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2608  methyl-accepting chemotaxis protein  46.81 
 
 
655 aa  254  3e-66  Agrobacterium vitis S4  Bacteria  normal  0.445883  n/a   
 
 
-
 
NC_010581  Bind_0080  methyl-accepting chemotaxis sensory transducer  50 
 
 
510 aa  254  4.0000000000000004e-66  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2464  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.88 
 
 
605 aa  254  4.0000000000000004e-66  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_0082  methyl-accepting chemotaxis sensory transducer  49.12 
 
 
665 aa  253  5.000000000000001e-66  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0580  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.24 
 
 
606 aa  252  1e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.237889  normal 
 
 
-
 
NC_011369  Rleg2_2181  methyl-accepting chemotaxis sensory transducer  46.45 
 
 
606 aa  251  2e-65  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.440189  normal  0.953277 
 
 
-
 
NC_011989  Avi_3714  methyl-accepting chemotaxis protein  47.99 
 
 
679 aa  251  2e-65  Agrobacterium vitis S4  Bacteria  normal  0.0885803  n/a   
 
 
-
 
NC_011369  Rleg2_0537  methyl-accepting chemotaxis sensory transducer  48.17 
 
 
605 aa  251  2e-65  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.180661 
 
 
-
 
NC_011988  Avi_5554  methyl-accepting chemotaxis protein  50.79 
 
 
653 aa  251  3e-65  Agrobacterium vitis S4  Bacteria  normal  0.0672502  n/a   
 
 
-
 
NC_012850  Rleg_0581  methyl-accepting chemotaxis sensory transducer with Cache sensor  48.31 
 
 
607 aa  251  3e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.893675 
 
 
-
 
NC_011989  Avi_0980  methyl-accepting chemotaxis protein  49.66 
 
 
611 aa  250  4e-65  Agrobacterium vitis S4  Bacteria  normal  0.442512  n/a   
 
 
-
 
NC_009636  Smed_2893  methyl-accepting chemotaxis sensory transducer  48.18 
 
 
589 aa  250  4e-65  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_2860  methyl-accepting chemotaxis protein  48.84 
 
 
668 aa  250  6e-65  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0681  methyl-accepting chemotaxis sensory transducer  47.94 
 
 
481 aa  249  9e-65  Acidiphilium cryptum JF-5  Bacteria  normal  0.123667  n/a   
 
 
-
 
NC_012850  Rleg_0606  methyl-accepting chemotaxis sensory transducer  51.5 
 
 
644 aa  249  9e-65  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.307243 
 
 
-
 
NC_011989  Avi_1200  methyl-accepting chemotaxis protein  45.94 
 
 
728 aa  249  1e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4013  methyl-accepting chemotaxis protein  39.06 
 
 
756 aa  248  1e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5166  methyl-accepting chemotaxis sensory transducer  48.32 
 
 
669 aa  248  2e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3923  methyl-accepting chemotaxis protein  44.94 
 
 
843 aa  248  2e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_2195  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  50.17 
 
 
577 aa  248  2e-64  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5069  methyl-accepting chemotaxis sensory transducer  47.06 
 
 
714 aa  247  4e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.277036  normal 
 
 
-
 
NC_011368  Rleg2_5354  methyl-accepting chemotaxis sensory transducer  46.89 
 
 
714 aa  247  4e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.642158  normal  0.0994281 
 
 
-
 
NC_012848  Rleg_5255  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49 
 
 
585 aa  247  4e-64  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.700683  normal 
 
 
-
 
NC_011989  Avi_3729  methyl-accepting chemotaxis protein  45.8 
 
 
644 aa  247  4.9999999999999997e-64  Agrobacterium vitis S4  Bacteria  normal  0.554142  n/a   
 
 
-
 
NC_011370  Rleg2_6126  methyl-accepting chemotaxis sensory transducer  47.25 
 
 
650 aa  246  6.999999999999999e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.375381  normal  0.0878449 
 
 
-
 
NC_011365  Gdia_1550  methyl-accepting chemotaxis sensory transducer  42.45 
 
 
531 aa  246  8e-64  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.483034  normal  0.19588 
 
 
-
 
NC_011368  Rleg2_4811  methyl-accepting chemotaxis sensory transducer  50.17 
 
 
625 aa  246  9e-64  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.327513  normal 
 
 
-
 
NC_011989  Avi_0994  methyl-accepting chemotaxis protein  47.92 
 
 
649 aa  246  9.999999999999999e-64  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_4113  methyl-accepting chemotaxis protein  48.16 
 
 
778 aa  245  1.9999999999999999e-63  Agrobacterium vitis S4  Bacteria  normal  0.433818  n/a   
 
 
-
 
NC_011369  Rleg2_0563  methyl-accepting chemotaxis sensory transducer  51.72 
 
 
645 aa  244  3.9999999999999997e-63  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.73856 
 
 
-
 
NC_011989  Avi_2775  methyl-accepting chemotaxis protein  47.3 
 
 
558 aa  243  5e-63  Agrobacterium vitis S4  Bacteria  normal  0.536477  n/a   
 
 
-
 
NC_011989  Avi_1117  methyl-accepting chemotaxis protein  45.05 
 
 
657 aa  243  9e-63  Agrobacterium vitis S4  Bacteria  normal  0.593573  n/a   
 
 
-
 
NC_012850  Rleg_2216  methyl-accepting chemotaxis sensory transducer  42.09 
 
 
624 aa  242  1e-62  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.435024  normal  0.249864 
 
 
-
 
NC_007802  Jann_2369  methyl-accepting chemotaxis sensory transducer  35.16 
 
 
528 aa  241  2e-62  Jannaschia sp. CCS1  Bacteria  normal  0.0870529  normal  0.351565 
 
 
-
 
NC_008044  TM1040_1977  methyl-accepting chemotaxis sensory transducer  48.56 
 
 
485 aa  241  2e-62  Ruegeria sp. TM1040  Bacteria  normal  0.911865  normal  0.282235 
 
 
-
 
NC_009484  Acry_2990  methyl-accepting chemotaxis sensory transducer  50 
 
 
631 aa  241  2e-62  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1790  methyl-accepting chemotaxis sensory transducer  48.81 
 
 
694 aa  242  2e-62  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  45 
 
 
860 aa  241  2.9999999999999997e-62  Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_007794  Saro_0852  methyl-accepting chemotaxis sensory transducer  45.4 
 
 
593 aa  240  4e-62  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.278676  n/a   
 
 
-
 
NC_011369  Rleg2_1998  methyl-accepting chemotaxis sensory transducer  42.17 
 
 
624 aa  240  4e-62  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.128789  normal  0.773053 
 
 
-
 
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