Gene Avi_0996 details

Gene Information

• Locus tag: Avi_0996
• ID: 7387094
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 846617
• End bp: 848560
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643650502
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_002548710
• Protein GI: 222147753
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTC TGGATAATAT ACGGATCGTA GCAAAAATTG GACTGACATT TGCAATCTTG 
CTTGCTGTTA GTCTTGTTGT GAATGCGGTC AGCTGGCGTT CGCTCTCCAA TCAGGAGCAA 
TCGTCTGGAT GGACTGAGCA CACTTATCAA GTGCTGCAAA AAATGGATGC CATTGTCGCG 
TCCATGGTCA ATCAGGAAAC CGGCATTCGC GCTTATCTTC TGTCGGAAGC TGATGAGAAA 
TTTCTCGATC CGCAAAAGGC TGGCTTAAAG AATTATACTG ATGCCTATGC AGCTGTTCGC 
AGCCTGACAT CTGACAATCA GGTCCAGCAG AAGCGTCTCG CCGATCTCGA TGCCATGGTT 
CAGGATTGGC AGACGAAAGT CGTTGCCAAG GAGCTTGCCC TGGCGAAAGA CCCGGCGACC 
CGCGATCAGG GCCGCCAGTT GGAGATTTCC GGTGCGGGCA AGACCTATAT GGATGGCATT 
CGCGCCAAGG CCAAGGAAAT TGCCGATGAG GAAAGCGCGC TTCTCAGCGT GCGCCAGAAA 
GCTGCTGACG CCGCCGCCTA TGATGCCCGC CGCAATATTC TGCTGGGCAG CGGTACGCTT 
GTCTTGCTGA TCGGTTTGTC GCTTCTTCTC CTCAACAAGG GCATGATTGC GCCGCTGACC 
CGGATCACGG CGTCAATGCG CAGCCTTGCA ACTGGTGAAA CGGCAATCGA CATCCCCGGC 
ATTGGCCGCC GCGACGAAGT CGGTCATATG GCCGATGCGG TTGAAGTGTT CCGCAAGAAC 
GCCATTGCCA ATCGCGAGTT GGAAGAGCAG GCAACGGTCA ACCGCCAGCA AACGGCACAG 
ACCCAGGCTG CCCATCAACA GCGCGCTGAG CAGGAAGCGG CCAATCTGCG ATTTGCAACG 
CAGACCCTTG GCGAGGGCTT GAAGCGCCTG GCGCAGGGCG ACGTATCCTT CCAGCTCAAC 
GATGCTTTCG CCGCTGAATA TGAATCGCTG CGCCAGGATT TCAACGCCTC GCTGGAACAG 
CTTGGAACAA CGCTCGGCTC CGTCCTCCAG ACCGTCGAAG GCATGGAAAA CGGCACCCGT 
GAAATTGCCG ATGGCACGAA TGATTTGTCC AAGCGGACCG AGCAGCAGGC AGCAGCCCTG 
GAAGAAACGG CGGCGGCGCT CGACCAGATC ACCGTCAATG TGACCAATTC CTCGCAGCGC 
ACGGAAGAAG CCCGCTCTGT GGCGATTACC GCTAACCAGA ACGCCGTGCG GTCGTCGGAA 
GTCGTCAATC AGGCCGAAAA CGCCATGAAG CGGATCGAGG AAAGCTCGCA GCAGATTTCC 
AACATCATCG GCGTGATCGA TGAAATCGCC TTCCAGACCA ATCTTCTGGC ACTGAATGCC 
GGTGTCGAAG CAGCGCGCGC CGGTGAAGCC GGTAAGGGCT TTGCGGTTGT CGCCCAGGAA 
GTGCGTGAAC TGGCGCAACG GTCTGCCCAG GCTGCCAAGG AAATCAAGGG TCTGATCCAG 
AACTCCTCTT TGGAAGTCGA TAGCGGCGTC AAGCTGGTGC GGGAAACCGG TGTTGCCCTG 
AAGTCGATCG GCGATCACGT GGTCCAGATC AACCAGTTGA TGGAGGCAAT CGCCACATCG 
GCACGGGAAC AGTCCACCGG TCTTGCCGAA GTCAATTCGG CGGTCAACCA GATGGACCAG 
ACGACGCAGC AGAATGCCGC CATGGTCGAG CAATCGACCG CCGCTGCTGC AGCTCTTGCC 
ACCGAAGCCA ACCGTCTGAA GACGCTTGTC AGCCAGTTCC AGCTTGCGGG CCGGAGGTCA 
TCATTTGCCG GACATCCGGC AGTTGCCAGC GCATCGCAGC GTCCAATTGC CTCACCCGCC 
CGTGCGCTGG CCTCCAAGAT CGGCAAGGCC TTCGGCGGAG GGGCATCGTC TGCCGCCGTC 
AAACAGGAAT GGTCGGAATT CTGA 

 

Protein sequence

MKILDNIRIV AKIGLTFAIL LAVSLVVNAV SWRSLSNQEQ SSGWTEHTYQ VLQKMDAIVA 
SMVNQETGIR AYLLSEADEK FLDPQKAGLK NYTDAYAAVR SLTSDNQVQQ KRLADLDAMV 
QDWQTKVVAK ELALAKDPAT RDQGRQLEIS GAGKTYMDGI RAKAKEIADE ESALLSVRQK 
AADAAAYDAR RNILLGSGTL VLLIGLSLLL LNKGMIAPLT RITASMRSLA TGETAIDIPG 
IGRRDEVGHM ADAVEVFRKN AIANRELEEQ ATVNRQQTAQ TQAAHQQRAE QEAANLRFAT 
QTLGEGLKRL AQGDVSFQLN DAFAAEYESL RQDFNASLEQ LGTTLGSVLQ TVEGMENGTR 
EIADGTNDLS KRTEQQAAAL EETAAALDQI TVNVTNSSQR TEEARSVAIT ANQNAVRSSE 
VVNQAENAMK RIEESSQQIS NIIGVIDEIA FQTNLLALNA GVEAARAGEA GKGFAVVAQE 
VRELAQRSAQ AAKEIKGLIQ NSSLEVDSGV KLVRETGVAL KSIGDHVVQI NQLMEAIATS 
AREQSTGLAE VNSAVNQMDQ TTQQNAAMVE QSTAAAAALA TEANRLKTLV SQFQLAGRRS 
SFAGHPAVAS ASQRPIASPA RALASKIGKA FGGGASSAAV KQEWSEF