| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1713 |
|---|
| Symbol | |
|---|
| ID | 4603964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 2093877 |
|---|
| End bp | 2095877 |
|---|
| Gene Length | 2001 bp |
|---|
| Protein Length | 666 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639781076 |
|---|
| Product | putative methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_927589 |
|---|
| Protein GI | 119774849 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000425798 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0665929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGC GATGGATTGC CAACCTCAGT ATGAAACTCA AACTTATGCT GGTATTCATG
CCACCTCTGT TGGGCTTTCT CATCTTTGGC GGCATTTTGC TGGACGACAA AATAGATGAG
TCAAACTCTC TCCAAAATGT ACAGCAATTA ACAGAACTTG CTGTCATCAA CAGCGCTCTG
GTGCATGAGC TGCAAAAAGA GCGCGGCATG AGCGCAGGCT TTTTGGGCTC CAAGGGCCAG
AGTTTTAAGG CTCAGTTGCC TTCACAACGT AGTTTGACCG ATGAGAAATT GCGCACTTTC
ACCCAATACG TGAAGGGAAA GCAGTTCGCC AGCCATGTGC AGGATGAGGT GCAGGGGGCG
GCAGCTGAAC TGAGCAGACT GGCAAGCATG CGTGGTCAGG TGGATGGCCT GAGCATTTCA
GTGGCAGACG AAGTCGCCTA TTACACAGGC CTTAATAAGC GCCTGCTCGG TATAGTCGAT
GACATAGTTC ATGAAGGCGC AGATAAGAAA ATCGCCGTGG CGTCTGCTGC CTTCAGTGCT
TATCTGCAAA TGAAAGAGCG TGCCGGGATA GAAAGAGCAG TGCTTTCCTC TACTTTTGGC
AACGACGGTT TCAAACCCGG AGTGTATACC CGAGCCGTGA GATTGATGTC AGAACAGGAT
ACCTACGCAG AGCGTTTCGA TGCGCTCGCT TCAGACGAGT GGCGCCGCGA ATGGCAACGG
ACGTTGCAGA GTCCTGAAAT TGCCGAAGTG AGCCGTTATC GAGAACTGGC TTTAAGTCAG
GACAATCAAG CCATCGCCAA AACCTCTCCC GAAGATTGGT TTAAGGCATC AACTGGGCGG
ATTAACTTGC TCTACAGTGT TGAAAATGTG CTGGCAAAGA GTCTTGATGA ACTCACCGAT
GCCCGTCTTC AGACTGCCAA TTGGCATATG ATGCTGATGA TGTCTGCGCT TGCGGTTGTT
TTGTTCCTCG TGGCGATGAT GGGGCTATCG GTCATGGGGT ATCTCAATCG CTCCGTGGTC
CATATAGAAA ATCAGATGCG TCGAGCCCGT GAAGAGTTCG ATTTATCGAC CCGAATCACG
CTGGACAGCA CCGACGAATT GGGGAGCCTT GGCAATGCTT TTAACGGCAT GATGAATGAT
TTTGAGGCCG TTATACACCA GGTTAAAACC AACAGTCTGA AAGTAACAGA TGCGGTTAAA
CGCATGGAAT CCCACTCCAA TCAGATGCGC CATGATGTAG CACAGGGCCA CTCAGAGGCC
GAACAGGTGG CATCCGCCAT GACTGAAATG AGCGCTACAG TGAGCCAGAT TGCATCCAAC
GCAGTGGAAG CCGCATCCGC ATCCGGCAAA GCCAATCAGG AAGCCCGCAC CGGTAATAAA
GAAGTCGGTA ACACAGGAAA AACAATAAGC GCGCTTGCAT CAGAAATCGA TGCCGCAGCG
ATTGCCATTA CCAAGCTGGA TACCGATATT CAGGGTATTG TGAGTGTACT CGAGGTAATA
AGCGGCATTG CGGAGCAAAC CAATTTGCTG GCTCTCAACG CCGCTATTGA GGCGGCAAGG
GCAGGGGAAA TGGGTCGTGG TTTTGCTGTT GTGGCTGACG AAGTTCGCTC GCTTGCACAG
CGAGCTCAAT CGTCCACTAC GGATATTCGC ACCATGACAG AGCGGCTTAA GGAGGGGGCC
AGGGTTGCGG TGGATGCCAT GTCTCGCGGC CAAACTCAGG CTCAGGCCAG TGTCCAGGAA
GTCAATCATG CCGGTGAAGA GCTCAGACGT ATTGTGGACT ATGTGAGTGT CATTGACAGT
ATGAACGAGC AGATTGCAGC GGCAACTCAC GAGCAAAGTG CTGTTGCTGA AGAAGTGAAT
CGCAATGCGC TCAGGATCAG TGAAATCTAT CAAAACACCC ATCAGGTCGC CGATGAGTTG
GGGCGTATCA ATGACGATTT GCTGAGTGCG GTTGATGCCA TGGGTAAAGA AGTCAGCAAA
TTTTCCTTAA GTCGTGGCTG A
|
|---|
| Protein sequence | MNMRWIANLS MKLKLMLVFM PPLLGFLIFG GILLDDKIDE SNSLQNVQQL TELAVINSAL
VHELQKERGM SAGFLGSKGQ SFKAQLPSQR SLTDEKLRTF TQYVKGKQFA SHVQDEVQGA
AAELSRLASM RGQVDGLSIS VADEVAYYTG LNKRLLGIVD DIVHEGADKK IAVASAAFSA
YLQMKERAGI ERAVLSSTFG NDGFKPGVYT RAVRLMSEQD TYAERFDALA SDEWRREWQR
TLQSPEIAEV SRYRELALSQ DNQAIAKTSP EDWFKASTGR INLLYSVENV LAKSLDELTD
ARLQTANWHM MLMMSALAVV LFLVAMMGLS VMGYLNRSVV HIENQMRRAR EEFDLSTRIT
LDSTDELGSL GNAFNGMMND FEAVIHQVKT NSLKVTDAVK RMESHSNQMR HDVAQGHSEA
EQVASAMTEM SATVSQIASN AVEAASASGK ANQEARTGNK EVGNTGKTIS ALASEIDAAA
IAITKLDTDI QGIVSVLEVI SGIAEQTNLL ALNAAIEAAR AGEMGRGFAV VADEVRSLAQ
RAQSSTTDIR TMTERLKEGA RVAVDAMSRG QTQAQASVQE VNHAGEELRR IVDYVSVIDS
MNEQIAAATH EQSAVAEEVN RNALRISEIY QNTHQVADEL GRINDDLLSA VDAMGKEVSK
FSLSRG
|
|---|
| |