Gene Daci_3786 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaci_3786 
Symbol 
ID5749369 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDelftia acidovorans SPH-1 
KingdomBacteria 
Replicon accessionNC_010002 
Strand
Start bp4164411 
End bp4166243 
Gene Length1833 bp 
Protein Length610 aa 
Translation table11 
GC content68% 
IMG OID641298885 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001564803 
Protein GI160899221 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0254049 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.3858 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCCAGT CCCTGCGTGC GCGACTCATC GCGCTCAGCG TGGCCATCGT CACCGTGGCC 
ATGCTGGCCC TGGCCATTGC CAACTTCCTC ACGGTGCAGC GCCATGTGCT GTCCACCCTC
GACGACCAGA GCCGCCAGCT CGTGAACGCC CAGGCCCAGG TACTGGGCGA ATGGGTGGCG
ACCAAGCGCC TGCTGACCCA TACCCTGGCG CAGGCGGTCG ATACGCCGGA GCCGCGTGCC
GTGGTCCAGG CTCTGCGCGA CGGCGGCGGC TTCTCGGATG CCTACTTCGG CTACACCGAC
AAGCGCATGT TCTTCCTCAA CGAGATGGCT GCCGACTACG ACGTGACGGC CCGCCCCTGG
TTCAGGCAGG CGCTCAAGGA AGGCCGCCCC ATCGTGACGG CGCCCTATCT GTTTGTCTCT
CCGCCCGAAG TGGGCGTGAC CTTTGCCGAG CCCGTGGGCC CTGCCGGCAA TCCCGTCGCC
GTGGTCGGCA CCGACGTGCT GCTCACCACC GTGGTGCGCA CCGTGGGCGC CATCCGGCCC
ACGCCGGGCA GCTTTGCCTT CTTGGTGGAT GAGGCGGGCG CCATCGTCAC CCACCCCGAT
CCGGCACTCA CGCTCAAGCC CGTCTCCGCG CTCTCGCCCC AGTTGCGTGC CGACGCAATC
CAGGCCCTGC CCAAGGCGGA CTCCGGCATG CGCACGGCCG TCGGCGGCAA GGACTTCCTG
CTCTACGGCC AGGGCGTGCC CGGCACGAAC TGGCAACTGG TGGTGGCCGT GCAGCGCGAC
GAGGCGCTGT CCGCGCTGGG TTCGCTGCTC AAGGTGTCGG GCGCCATCGT TGCCATTTCG
CTGATCCTGG CGATTGCGCT GCTGGGCGCC GTCATCGCCC GCGTCACGCG CCGGCTGGCC
GTGGTGCGCG ATGCGCTGGA AGACATCGCC TCGGGTGACG GCGATCTCAC GCGCCGCCTG
TCGGTGCAAG GCAACGACGA ACTGACGCAG ATCGCACGCG CGTTCAACCA CTTCACCGAC
AAGATCGCCT CGGTGCTGGT GCGCATCCGG GAATCGTCCG AGACCGTGCG CCATGCTTCC
ACCGAAATCG CCAGCGGCAA CCAGGATCTG TCGGCACGCA CCGAGCAGCA GGCCAGTTCG
CTGGAGGAAA CGGCTGCCGC CATGGAGCAG CTCACTGCCA CCGTGCAGCA CAACGCCGAG
AATGCGCGCC AGGCGCGCCA GCTGGCCAGC AGCGCCTCGG ACATCGCCAC GCATGGCGGC
ACCGTGGTGG ACCAGGTGGT TCGCACCATG GGCGGCATCG AGCAGTCCTC GCACCGCATT
GCCGACATCA TCGGCGTGAT CGACTCCATT GCCTTCCAGA CCAACATCCT GGCGCTGAAC
GCCGCCGTGG AAGCGGCCCG TGCCGGTGAG CAGGGCCGGG GCTTTGCCGT GGTGGCCTCC
GAGGTGCGCA CGCTGGCCCA GCGCAGCGCC ACGGCCGCCA AGGAAATCAA GGCGCTGATC
GACGACTCCG TGGGCCAGGT CGATGCCGGC AGCCGCCTGG TGCAGGACGC GGGCGCCACC
ATGGGCAAGG TGGTGGAAAG CGTGCAGCGC GTGACCGCCA TCGTCACCGA GATCAGCAAT
GCCAGCCAGG AACAGAGCAC GGGCATTGCC GAAATCGGGA CCGCCGTCAG CCAGATGGAC
CAGTCCACCC AGCAGAACGC GGCCCTGGTC GAAGAGGCCA CGGCCGCGGC GCAGTCGCTG
CAGCAGCAGG CCGCGCAACT GGCGGACGTG GTGGCAGGCT TTCGGCTGGA CAGCGAATCA
TCCCGGTCCA GAAGCATCGC CCTGCATAGG TGA
 
Protein sequence
MFQSLRARLI ALSVAIVTVA MLALAIANFL TVQRHVLSTL DDQSRQLVNA QAQVLGEWVA 
TKRLLTHTLA QAVDTPEPRA VVQALRDGGG FSDAYFGYTD KRMFFLNEMA ADYDVTARPW
FRQALKEGRP IVTAPYLFVS PPEVGVTFAE PVGPAGNPVA VVGTDVLLTT VVRTVGAIRP
TPGSFAFLVD EAGAIVTHPD PALTLKPVSA LSPQLRADAI QALPKADSGM RTAVGGKDFL
LYGQGVPGTN WQLVVAVQRD EALSALGSLL KVSGAIVAIS LILAIALLGA VIARVTRRLA
VVRDALEDIA SGDGDLTRRL SVQGNDELTQ IARAFNHFTD KIASVLVRIR ESSETVRHAS
TEIASGNQDL SARTEQQASS LEETAAAMEQ LTATVQHNAE NARQARQLAS SASDIATHGG
TVVDQVVRTM GGIEQSSHRI ADIIGVIDSI AFQTNILALN AAVEAARAGE QGRGFAVVAS
EVRTLAQRSA TAAKEIKALI DDSVGQVDAG SRLVQDAGAT MGKVVESVQR VTAIVTEISN
ASQEQSTGIA EIGTAVSQMD QSTQQNAALV EEATAAAQSL QQQAAQLADV VAGFRLDSES
SRSRSIALHR