| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0184 |
|---|
| Symbol | |
|---|
| ID | 5611419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 210845 |
|---|
| End bp | 213436 |
|---|
| Gene Length | 2592 bp |
|---|
| Protein Length | 863 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640931010 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor |
|---|
| Protein accession | YP_001471925 |
|---|
| Protein GI | 157373325 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCAC AAAACTCCAA CCTATCGAAT GCAAACAGCT TACCCATTGC TGGTTTGGTT
CTAATCCTTA TTTCATTAGG ATTACTATTT TCAGATCAGG CGACGAGCTG GGTTGTTGCA
ACTCAAATCA TTGCCATCAT GCTCATTGCC TCAGGGCTTG TGAAACATAA CCAATCACAA
AAATTAAGCG AACAGGCACT CAATGAGGTG AGCCGGGCTC TGGGGAGCAG AGAGAAAATA
ACGTTTTCAG ATATTGATAT TCCTAATTGG GAATTGCTCA CCAATAAAAT CGGGAATTTA
CATGAAAAAC AACTGCAAAA CGAAACGATT ACCAAGGCGC TAGACGTCTG TAAGACCAAC
GTCATGATGG CTGATGTCGA TTACAACATC ACCTATATGA ATGACTCAGT CAACGAAATG
CTCTTAGAAA ATGAGAAGAC CCTTAAAACG GGTTTACCCA ACTTCGATGC CAAAAATCTT
ATCGGTAAGA ACATCGATAT TTTTCATAAA AACCCTTCAC ATCAGAGAAG AATGCTCGAC
GGCTTAAATT CAAGCTACGA GGTTAACATT GAAGTAGCAG GCCTTAATTT CAATTTAATC
GCCAGCCCCA TATTTTTAAA TGGTGTACGA ACCGGCACCG TCGTCGAATG GCAAGATGTC
ACTGCAAAAT TAGCAAAAGA GGCTAAGGAG CAGAGACTAG CCTCCGAAAC GAGCCGCATC
AAGCAAGCAT TAGATGTCTG TAAAGCCAAC GTCATGATGG CCGATGTCGA CTACAACATC
ATCTATCTCA ATGACTCGGT CAACGAGATG TTGGGAGATA ATGAAAAGAC ACTTCAACAG
AGTCTACCGA ACTTCAATGT CAAAGAGCTT ATCGGCAATA ACATAGACAT CTTCCATAAG
AGCCCATCGC ACCAAAGAAA AGTACTGGAT AATTTAACCG GCAGCTATGA AGCCAGTATA
AAAGTCGCAG GCCTGGATTT CACCTTGATA GCGACCCCGG TTTTCAATAA CGGAGAGCGC
ACAGGTACCG TAGTTGAATG GCAAGATGTT ACCGCTAAAT TAGCTAAGGA AGCGGAAGAT
CTAAGACTCG CTTCGGAAAA TGCTCGTATC AAGCAAGCAC TCGATAATGT ATCGGCAAAT
ACCATGGTGG CAGATACAGA TCTTAATATC ATCTACATGA ATAACGCCGT CGGGAACATG
TTCAAAGCGG CGCAATCAGA TATAGTGAAA GATCTGCCCA ACTTCGATGC CAATAATCTT
ATCGGCGTAA ATATCGATGG TTTCCATAAA AACCCCAGCC ATCAACGTAA CTTATTAGGC
AGTTTATCGA CAACCTATTC CAGCCAACTC AAGGTCGGCG GACGCACATT CAAAGTTGTG
GCTAACCCAA TCAAAGATGA TAACGGAGAG AGCATAGGCA CGGTAGTGGA ATGGACAGAC
CGCACCGCAG AGGTTGCCAT CGAACATGAG ATCGACACCA TTATCTCATC GGCGACGTCA
GGAGACTTGA GTCATAGAGT TTCAATCGAA GGAAAAGAGG GATTCTTCCT TAACCTATCT
AATGGATTAA ATCGATTAGT TGGGATTGCT GACAATGTAA TTTCAGATGT GGTCAACATG
TTCGATGGAC TCGCAAAGGG CGATCTAACC CGTCAGATCG ATGGCGAATA TGAAGGTCAA
TTTGAAAAAC TGCAACAGGA CGCAAACGCG ACGGCTTCCA GGCTTACCGA AGTGATAGGT
GGCATCAACG AATCTGCCAA CACGGTGACC TCCGGGGCCG AAGAGATTGC ACAGGGCAAC
GCGGATCTTA GTCAGCGAAC CGAAGAGCAA GCCGCCTCAC TGGAGGAGAC AGCTTCAAGC
ATGGAAGAGA TGACCGCAAC CGTGACTCAA AGCGCTCAAA ATGCAACGCT CGCCAATGAG
TTGGCTCAGG AAGCCAATTC TAAAGCCGAT CATGGCGGTA AGGTGGTTGA ACAAGCCGTC
ACTGCAATGG AAGCCATCAA TGACTCCAGC AAGCGGATAT CTGACATCAT AGGTGTCATC
GATGAGATAG CCTTCCAGAC CAACCTGCTG GCACTCAATG CGGCAGTCGA AGCGGCGCGA
GCCGGTGAAC AGGGTCGTGG TTTTGCCGTC GTCGCCGGAG AGGTCAGAAA TCTGGCTCAA
CGCAGCGCCG GCGCCGCCAA AGAGATTAAG GAGCTGATAC GCGACAGCGT AGGTAAGGTC
ACCGACGGAA CTCAACTGGT TAACCAGTCG GGTGACACAC TTCAGGATAT TGTGCAGGCC
GTGACTAAAG TGGCCGACAT GATTAGCCAG ATAAGCATAG CGTCAGAGCA ACAATCTTCA
GGCATTCAGG AAGTGAATAA GGCTATCTCC CAAATGGATG AGATGACTCA ACAAAATGCG
GCCTTGGTGG AGCAGGTATC AGCGGCAGGA GATGCCATGG CCGAACAGGC CCGCAACATG
AAGAGTCAGC TCAGTTTCTT CCAGGCTAAA GAACAAACCA GTTCAGGAAT AACATCGGCA
CCATTAGCAC TCGTTTCGGG AGACACTCAC GGAAACCTGA ATATCAGCAG TGAAGAGTGG
AACGAATTTT AG
|
|---|
| Protein sequence | MESQNSNLSN ANSLPIAGLV LILISLGLLF SDQATSWVVA TQIIAIMLIA SGLVKHNQSQ
KLSEQALNEV SRALGSREKI TFSDIDIPNW ELLTNKIGNL HEKQLQNETI TKALDVCKTN
VMMADVDYNI TYMNDSVNEM LLENEKTLKT GLPNFDAKNL IGKNIDIFHK NPSHQRRMLD
GLNSSYEVNI EVAGLNFNLI ASPIFLNGVR TGTVVEWQDV TAKLAKEAKE QRLASETSRI
KQALDVCKAN VMMADVDYNI IYLNDSVNEM LGDNEKTLQQ SLPNFNVKEL IGNNIDIFHK
SPSHQRKVLD NLTGSYEASI KVAGLDFTLI ATPVFNNGER TGTVVEWQDV TAKLAKEAED
LRLASENARI KQALDNVSAN TMVADTDLNI IYMNNAVGNM FKAAQSDIVK DLPNFDANNL
IGVNIDGFHK NPSHQRNLLG SLSTTYSSQL KVGGRTFKVV ANPIKDDNGE SIGTVVEWTD
RTAEVAIEHE IDTIISSATS GDLSHRVSIE GKEGFFLNLS NGLNRLVGIA DNVISDVVNM
FDGLAKGDLT RQIDGEYEGQ FEKLQQDANA TASRLTEVIG GINESANTVT SGAEEIAQGN
ADLSQRTEEQ AASLEETASS MEEMTATVTQ SAQNATLANE LAQEANSKAD HGGKVVEQAV
TAMEAINDSS KRISDIIGVI DEIAFQTNLL ALNAAVEAAR AGEQGRGFAV VAGEVRNLAQ
RSAGAAKEIK ELIRDSVGKV TDGTQLVNQS GDTLQDIVQA VTKVADMISQ ISIASEQQSS
GIQEVNKAIS QMDEMTQQNA ALVEQVSAAG DAMAEQARNM KSQLSFFQAK EQTSSGITSA
PLALVSGDTH GNLNISSEEW NEF
|
|---|
| |