More than 300 homologs were found in PanDaTox collection
for query gene Sde_3105 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009092  Shew_0111  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  57.1 
 
 
864 aa  687    Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  100 
 
 
767 aa  1564    Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0164  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  57.37 
 
 
1123 aa  723    Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0184  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  58.15 
 
 
863 aa  722    Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  56.5 
 
 
860 aa  721    Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_009052  Sbal_2114  methyl-accepting chemotaxis sensory transducer  49.21 
 
 
657 aa  574  1.0000000000000001e-162  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2245  methyl-accepting chemotaxis sensory transducer  48.98 
 
 
664 aa  569  1e-161  Shewanella baltica OS185  Bacteria  normal  0.232427  n/a   
 
 
-
 
NC_011663  Sbal223_2100  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.22 
 
 
665 aa  569  1e-161  Shewanella baltica OS223  Bacteria  normal  0.328344  normal 
 
 
-
 
NC_008322  Shewmr7_1883  methyl-accepting chemotaxis sensory transducer  48.57 
 
 
656 aa  571  1e-161  Shewanella sp. MR-7  Bacteria  normal  normal  0.113479 
 
 
-
 
NC_008577  Shewana3_2216  methyl-accepting chemotaxis sensory transducer  48.89 
 
 
657 aa  570  1e-161  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2123  methyl-accepting chemotaxis protein  48.49 
 
 
654 aa  567  1e-160  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2362  methyl-accepting chemotaxis sensory transducer  48.67 
 
 
664 aa  567  1e-160  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2091  methyl-accepting chemotaxis sensory transducer  48.41 
 
 
656 aa  568  1e-160  Shewanella sp. MR-4  Bacteria  normal  normal  0.684691 
 
 
-
 
NC_008463  PA14_02220  putative chemotaxis transducer  56.42 
 
 
679 aa  520  1e-146  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.329962  normal 
 
 
-
 
NC_007298  Daro_0729  PAS  55.11 
 
 
945 aa  515  1e-144  Dechloromonas aromatica RCB  Bacteria  normal  0.0635035  normal 
 
 
-
 
NC_009656  PSPA7_0256  chemotaxis transducer  58.89 
 
 
679 aa  509  1e-143  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0728  histidine kinase, HAMP region: chemotaxis sensory transducer  50 
 
 
792 aa  490  1e-137  Dechloromonas aromatica RCB  Bacteria  normal  0.066629  normal 
 
 
-
 
NC_009456  VC0395_0151  methyl-accepting chemotaxis protein  42.48 
 
 
678 aa  491  1e-137  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3112  putative methyl-accepting chemotaxis sensory transducer  56.43 
 
 
1029 aa  487  1e-136  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  46.43 
 
 
797 aa  429  1e-119  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_011071  Smal_1847  methyl-accepting chemotaxis sensory transducer  48.9 
 
 
793 aa  430  1e-119  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.143361  normal  0.380239 
 
 
-
 
NC_010717  PXO_00039  chemotaxis protein  46.99 
 
 
775 aa  426  1e-118  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.371493  n/a   
 
 
-
 
NC_007520  Tcr_0553  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.86 
 
 
888 aa  421  1e-116  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0206  methyl-accepting chemotaxis protein  47.5 
 
 
793 aa  415  1e-114  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0158  chemotaxis protein  49.89 
 
 
779 aa  410  1e-113  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3993  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.31 
 
 
701 aa  402  9.999999999999999e-111  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.311816 
 
 
-
 
NC_011071  Smal_1846  methyl-accepting chemotaxis sensory transducer  51.01 
 
 
755 aa  363  5.0000000000000005e-99  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.422723  normal  0.381468 
 
 
-
 
NC_010717  PXO_00047  chemotaxis protein  51.37 
 
 
733 aa  363  8e-99  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  54.18 
 
 
752 aa  359  9.999999999999999e-98  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_008789  Hhal_2163  methyl-accepting chemotaxis sensory transducer  42.02 
 
 
610 aa  356  8.999999999999999e-97  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00046  chemotaxis protein  54.47 
 
 
753 aa  351  3e-95  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1169  methyl-accepting chemotaxis sensory transducer  55.85 
 
 
740 aa  349  9e-95  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_00043  chemotaxis protein  54.68 
 
 
705 aa  346  1e-93  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.51691  n/a   
 
 
-
 
NC_011071  Smal_1851  methyl-accepting chemotaxis sensory transducer  50.62 
 
 
745 aa  345  2e-93  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195185 
 
 
-
 
NC_010524  Lcho_1530  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.88 
 
 
890 aa  344  2.9999999999999997e-93  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.155082 
 
 
-
 
NC_011989  Avi_2791  methyl-accepting chemotaxis protein  38.69 
 
 
622 aa  338  2.9999999999999997e-91  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3896  methyl-accepting chemotaxis sensory transducer  53.06 
 
 
706 aa  325  2e-87  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.337027  normal  0.882129 
 
 
-
 
NC_011071  Smal_3537  methyl-accepting chemotaxis sensory transducer  54.36 
 
 
843 aa  322  1.9999999999999998e-86  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  54.37 
 
 
572 aa  321  3e-86  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_010717  PXO_00045  chemotaxis protein  59.64 
 
 
691 aa  319  1e-85  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.505093  n/a   
 
 
-
 
NC_011071  Smal_3633  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.19 
 
 
845 aa  314  3.9999999999999997e-84  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.522396 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  58.97 
 
 
559 aa  313  5.999999999999999e-84  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  62.02 
 
 
586 aa  312  1e-83  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  62.02 
 
 
587 aa  312  1e-83  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  53.3 
 
 
584 aa  311  2.9999999999999997e-83  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  58.97 
 
 
585 aa  310  9e-83  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  51.47 
 
 
562 aa  307  6e-82  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  51.88 
 
 
579 aa  306  1.0000000000000001e-81  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  53.6 
 
 
559 aa  305  2.0000000000000002e-81  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_010524  Lcho_1531  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  36.94 
 
 
1019 aa  305  3.0000000000000004e-81  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.301691 
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  51.45 
 
 
554 aa  304  4.0000000000000003e-81  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  53.51 
 
 
569 aa  303  6.000000000000001e-81  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  59.57 
 
 
583 aa  303  8.000000000000001e-81  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_009485  BBta_2145  methyl-accepting chemotaxis protein  38.76 
 
 
781 aa  303  9e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.297887  normal 
 
 
-
 
NC_013421  Pecwa_3123  methyl-accepting chemotaxis sensory transducer  48.28 
 
 
555 aa  301  2e-80  Pectobacterium wasabiae WPP163  Bacteria  decreased coverage  0.000142041  n/a   
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  54.7 
 
 
549 aa  301  4e-80  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  50.15 
 
 
589 aa  300  5e-80  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_011083  SeHA_C4939  methyl-accepting chemotaxis protein I  51.12 
 
 
553 aa  300  6e-80  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.188217  normal 
 
 
-
 
NC_011080  SNSL254_A4887  methyl-accepting chemotaxis protein I  51.12 
 
 
553 aa  300  6e-80  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  53.76 
 
 
575 aa  300  1e-79  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  49.17 
 
 
578 aa  299  2e-79  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_011989  Avi_3714  methyl-accepting chemotaxis protein  46.49 
 
 
679 aa  298  3e-79  Agrobacterium vitis S4  Bacteria  normal  0.0885803  n/a   
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  65.1 
 
 
515 aa  298  3e-79  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_003296  RSp0507  methyl-accepting chemotaxis I  51.56 
 
 
600 aa  297  5e-79  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1208  methyl-accepting chemotaxis sensory transducer  47.57 
 
 
555 aa  297  5e-79  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000392698  n/a   
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  65.1 
 
 
515 aa  297  6e-79  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  56.29 
 
 
598 aa  297  6e-79  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  53.26 
 
 
584 aa  296  8e-79  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2418  methyl-accepting chemotaxis protein  52.27 
 
 
659 aa  296  8e-79  Vibrio cholerae O395  Bacteria  hitchhiker  0.00134538  n/a   
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  49.7 
 
 
557 aa  296  9e-79  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  49.7 
 
 
557 aa  296  9e-79  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0606  putative methyl-accepting chemotaxis transmembrane protein  61.26 
 
 
617 aa  296  1e-78  Ralstonia solanacearum GMI1000  Bacteria  normal  0.535208  normal  0.212062 
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  49.7 
 
 
557 aa  296  1e-78  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  61.89 
 
 
584 aa  296  1e-78  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_010524  Lcho_1532  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  30.27 
 
 
853 aa  295  2e-78  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.103077 
 
 
-
 
NC_012791  Vapar_4186  methyl-accepting chemotaxis sensory transducer  59.55 
 
 
577 aa  295  2e-78  Variovorax paradoxus S110  Bacteria  normal  0.494266  n/a   
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  56.38 
 
 
525 aa  295  2e-78  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  58.62 
 
 
519 aa  295  2e-78  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0231  methyl-accepting chemotaxis sensory transducer  63.82 
 
 
324 aa  295  3e-78  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1408  methyl-accepting chemotaxis sensory transducer  59.57 
 
 
513 aa  295  3e-78  Ralstonia pickettii 12D  Bacteria  normal  0.0312904  normal  0.0311205 
 
 
-
 
NC_010682  Rpic_0536  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.93 
 
 
609 aa  295  3e-78  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  60.16 
 
 
592 aa  294  3e-78  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  54.36 
 
 
560 aa  295  3e-78  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  60.16 
 
 
553 aa  294  4e-78  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_0523  methyl-accepting chemotaxis sensory transducer with Cache sensor  61.26 
 
 
608 aa  294  4e-78  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  55.9 
 
 
595 aa  294  5e-78  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  58.62 
 
 
519 aa  294  5e-78  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_012880  Dd703_2108  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
556 aa  294  5e-78  Dickeya dadantii Ech703  Bacteria  normal  0.0190315  n/a   
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  53.8 
 
 
559 aa  293  7e-78  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A4946  methyl-accepting chemotaxis protein I  51.54 
 
 
553 aa  293  8e-78  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.556415 
 
 
-
 
NC_011071  Smal_3007  methyl-accepting chemotaxis sensory transducer  47.83 
 
 
707 aa  293  9e-78  Stenotrophomonas maltophilia R551-3  Bacteria  normal  decreased coverage  0.00177393 
 
 
-
 
NC_003295  RSc3412  putative methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein  54.21 
 
 
515 aa  292  1e-77  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.934147 
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  60.47 
 
 
520 aa  292  1e-77  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  52.56 
 
 
542 aa  293  1e-77  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  64.75 
 
 
576 aa  293  1e-77  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  57.52 
 
 
653 aa  293  1e-77  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4696  methyl-accepting chemotaxis sensory transducer  56.11 
 
 
608 aa  292  2e-77  Ralstonia pickettii 12J  Bacteria  normal  0.319993  normal  0.0826606 
 
 
-
 
NC_011094  SeSA_A4786  methyl-accepting chemotaxis protein I  50.84 
 
 
553 aa  292  2e-77  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.709187  normal 
 
 
-
 
NC_012857  Rpic12D_3619  methyl-accepting chemotaxis sensory transducer  56.11 
 
 
608 aa  292  2e-77  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_4062  methyl-accepting chemotaxis sensory transducer  58.69 
 
 
653 aa  292  2e-77  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
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