More than 300 homologs were found in PanDaTox collection
for query gene Sde_3112 on replicon NC_007912
Organism: Saccharophagus degradans 2-40



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007912  Sde_3112  putative methyl-accepting chemotaxis sensory transducer  100 
 
 
1029 aa  2113    Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  54.96 
 
 
767 aa  507  9.999999999999999e-143  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_1002  methyl-accepting chemotaxis protein-like protein  30.88 
 
 
1100 aa  503  1e-141  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0184  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  54.87 
 
 
863 aa  505  1e-141  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0164  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  55.08 
 
 
1123 aa  501  1e-140  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  55.56 
 
 
860 aa  501  1e-140  Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_009092  Shew_0111  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  53.81 
 
 
864 aa  473  1e-132  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2123  methyl-accepting chemotaxis protein  50.96 
 
 
654 aa  443  1e-123  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2245  methyl-accepting chemotaxis sensory transducer  50.96 
 
 
664 aa  445  1e-123  Shewanella baltica OS185  Bacteria  normal  0.232427  n/a   
 
 
-
 
NC_007298  Daro_0728  histidine kinase, HAMP region: chemotaxis sensory transducer  50.74 
 
 
792 aa  443  1e-123  Dechloromonas aromatica RCB  Bacteria  normal  0.066629  normal 
 
 
-
 
NC_009052  Sbal_2114  methyl-accepting chemotaxis sensory transducer  50.96 
 
 
657 aa  445  1e-123  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1883  methyl-accepting chemotaxis sensory transducer  51.31 
 
 
656 aa  444  1e-123  Shewanella sp. MR-7  Bacteria  normal  normal  0.113479 
 
 
-
 
NC_008577  Shewana3_2216  methyl-accepting chemotaxis sensory transducer  51.31 
 
 
657 aa  444  1e-123  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2100  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  50.96 
 
 
665 aa  445  1e-123  Shewanella baltica OS223  Bacteria  normal  0.328344  normal 
 
 
-
 
NC_007298  Daro_0729  PAS  51.3 
 
 
945 aa  441  9.999999999999999e-123  Dechloromonas aromatica RCB  Bacteria  normal  0.0635035  normal 
 
 
-
 
NC_009997  Sbal195_2362  methyl-accepting chemotaxis sensory transducer  50.75 
 
 
664 aa  442  9.999999999999999e-123  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2091  methyl-accepting chemotaxis sensory transducer  51.31 
 
 
656 aa  442  9.999999999999999e-123  Shewanella sp. MR-4  Bacteria  normal  normal  0.684691 
 
 
-
 
NC_008463  PA14_02220  putative chemotaxis transducer  48.19 
 
 
679 aa  437  1e-121  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.329962  normal 
 
 
-
 
NC_009656  PSPA7_0256  chemotaxis transducer  51.86 
 
 
679 aa  434  1e-120  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00039  chemotaxis protein  47.3 
 
 
775 aa  390  1e-107  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.371493  n/a   
 
 
-
 
NC_011071  Smal_1847  methyl-accepting chemotaxis sensory transducer  45.96 
 
 
793 aa  387  1e-106  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.143361  normal  0.380239 
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  45.61 
 
 
797 aa  387  1e-106  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_009456  VC0395_0151  methyl-accepting chemotaxis protein  46.17 
 
 
678 aa  379  1e-103  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0553  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.76 
 
 
888 aa  360  9.999999999999999e-98  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3993  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.08 
 
 
701 aa  352  3e-95  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.311816 
 
 
-
 
NC_010524  Lcho_1530  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.54 
 
 
890 aa  350  6e-95  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.155082 
 
 
-
 
NC_007650  BTH_II0158  chemotaxis protein  44.01 
 
 
779 aa  345  2e-93  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0206  methyl-accepting chemotaxis protein  43.7 
 
 
793 aa  344  5.999999999999999e-93  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_2163  methyl-accepting chemotaxis sensory transducer  42.41 
 
 
610 aa  328  2.0000000000000001e-88  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  46.32 
 
 
752 aa  327  6e-88  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_010717  PXO_00043  chemotaxis protein  51.02 
 
 
705 aa  323  9.999999999999999e-87  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.51691  n/a   
 
 
-
 
NC_010717  PXO_00047  chemotaxis protein  51.18 
 
 
733 aa  321  3e-86  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3633  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  39.42 
 
 
845 aa  316  9.999999999999999e-85  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.522396 
 
 
-
 
NC_010717  PXO_00046  chemotaxis protein  50.29 
 
 
753 aa  315  3.9999999999999997e-84  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1169  methyl-accepting chemotaxis sensory transducer  50.73 
 
 
740 aa  313  6.999999999999999e-84  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1846  methyl-accepting chemotaxis sensory transducer  49.56 
 
 
755 aa  313  1e-83  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.422723  normal  0.381468 
 
 
-
 
NC_010506  Swoo_3576  methyl-accepting chemotaxis sensory transducer  33.21 
 
 
772 aa  308  3e-82  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0207298 
 
 
-
 
NC_011071  Smal_3537  methyl-accepting chemotaxis sensory transducer  49.42 
 
 
843 aa  305  2.0000000000000002e-81  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1851  methyl-accepting chemotaxis sensory transducer  42.51 
 
 
745 aa  300  1e-79  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195185 
 
 
-
 
NC_010506  Swoo_0559  methyl-accepting chemotaxis sensory transducer  34.69 
 
 
773 aa  298  4e-79  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0185  methyl-accepting chemotaxis protein  34.82 
 
 
770 aa  295  2e-78  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1531  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  33.28 
 
 
1019 aa  293  8e-78  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.301691 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  56.38 
 
 
569 aa  289  2e-76  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  50.5 
 
 
651 aa  278  4e-73  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_008782  Ajs_1951  methyl-accepting chemotaxis sensory transducer  53.36 
 
 
508 aa  278  4e-73  Acidovorax sp. JS42  Bacteria  normal  normal  0.747742 
 
 
-
 
NC_003295  RSc0606  putative methyl-accepting chemotaxis transmembrane protein  53.9 
 
 
617 aa  276  1.0000000000000001e-72  Ralstonia solanacearum GMI1000  Bacteria  normal  0.535208  normal  0.212062 
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  55.12 
 
 
559 aa  275  3e-72  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_010682  Rpic_0536  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.89 
 
 
609 aa  275  4.0000000000000004e-72  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0523  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.57 
 
 
608 aa  274  7e-72  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1752  methyl-accepting chemotaxis sensory transducer  51.16 
 
 
523 aa  273  9e-72  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3896  methyl-accepting chemotaxis sensory transducer  45.77 
 
 
706 aa  273  1e-71  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.337027  normal  0.882129 
 
 
-
 
NC_009485  BBta_2145  methyl-accepting chemotaxis protein  50 
 
 
781 aa  273  1e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.297887  normal 
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  51.74 
 
 
554 aa  273  1e-71  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  50.69 
 
 
542 aa  272  2e-71  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  48.11 
 
 
537 aa  272  2e-71  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  50.7 
 
 
583 aa  272  2e-71  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  47.15 
 
 
562 aa  271  2.9999999999999997e-71  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_007336  Reut_C6319  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  51.68 
 
 
601 aa  271  4e-71  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4354  methyl-accepting chemotaxis sensory transducer  50 
 
 
555 aa  271  4e-71  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  54.21 
 
 
587 aa  271  4e-71  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_009436  Ent638_0513  methyl-accepting chemotaxis sensory transducer  50.67 
 
 
586 aa  271  4e-71  Enterobacter sp. 638  Bacteria  normal  hitchhiker  0.00498581 
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  51.75 
 
 
527 aa  270  7e-71  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  53.38 
 
 
575 aa  270  8e-71  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_007404  Tbd_1618  chemotaxis sensory transducer  52.94 
 
 
557 aa  270  8e-71  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.126465 
 
 
-
 
NC_011989  Avi_1159  methyl-accepting chemotaxis protein  45.35 
 
 
671 aa  270  8e-71  Agrobacterium vitis S4  Bacteria  normal  0.573311  n/a   
 
 
-
 
NC_012848  Rleg_5166  methyl-accepting chemotaxis sensory transducer  44.54 
 
 
669 aa  270  8e-71  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0421  methyl-accepting chemotaxis sensory transducer  51.53 
 
 
618 aa  270  8.999999999999999e-71  Acidovorax citrulli AAC00-1  Bacteria  normal  0.627209  normal 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  51.69 
 
 
586 aa  270  1e-70  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_010002  Daci_3786  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.19 
 
 
610 aa  270  1e-70  Delftia acidovorans SPH-1  Bacteria  normal  0.0254049  normal  0.3858 
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  51.21 
 
 
557 aa  270  1e-70  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  51.94 
 
 
592 aa  270  1e-70  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  51.21 
 
 
557 aa  270  1e-70  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  49.66 
 
 
566 aa  269  2e-70  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  50.52 
 
 
553 aa  269  2e-70  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4184  methyl-accepting chemotaxis sensory transducer  54.05 
 
 
680 aa  269  2e-70  Variovorax paradoxus S110  Bacteria  normal  0.12793  n/a   
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  50.91 
 
 
572 aa  269  2.9999999999999995e-70  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  54 
 
 
585 aa  268  2.9999999999999995e-70  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_010717  PXO_00045  chemotaxis protein  52.5 
 
 
691 aa  268  2.9999999999999995e-70  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.505093  n/a   
 
 
-
 
NC_011071  Smal_3007  methyl-accepting chemotaxis sensory transducer  44.67 
 
 
707 aa  268  4e-70  Stenotrophomonas maltophilia R551-3  Bacteria  normal  decreased coverage  0.00177393 
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  50.87 
 
 
557 aa  268  4e-70  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_012912  Dd1591_1879  methyl-accepting chemotaxis sensory transducer  50.69 
 
 
661 aa  267  5.999999999999999e-70  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4786  methyl-accepting chemotaxis protein I  50.86 
 
 
553 aa  268  5.999999999999999e-70  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.709187  normal 
 
 
-
 
NC_009636  Smed_0082  methyl-accepting chemotaxis sensory transducer  44.07 
 
 
665 aa  266  1e-69  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0380  methyl-accepting chemotaxis sensory transducer  51.69 
 
 
549 aa  266  1e-69  Enterobacter sp. 638  Bacteria  normal  0.214895  normal 
 
 
-
 
NC_007952  Bxe_B2682  methyl-accepting chemotaxis sensory transducer  50.69 
 
 
580 aa  266  1e-69  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  50.52 
 
 
554 aa  266  1e-69  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  47.25 
 
 
584 aa  266  1e-69  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4946  methyl-accepting chemotaxis protein I  50.52 
 
 
553 aa  266  2e-69  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.556415 
 
 
-
 
NC_011992  Dtpsy_2969  methyl-accepting chemotaxis sensory transducer  51.74 
 
 
550 aa  266  2e-69  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  54.01 
 
 
581 aa  266  2e-69  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_009636  Smed_0051  methyl-accepting chemotaxis sensory transducer  49.16 
 
 
796 aa  266  2e-69  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.000000874578 
 
 
-
 
NC_007348  Reut_B5601  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.47 
 
 
551 aa  265  3e-69  Ralstonia eutropha JMP134  Bacteria  normal  0.510218  n/a   
 
 
-
 
NC_011989  Avi_0793  methyl-accepting chemotaxis protein  43.73 
 
 
740 aa  265  3e-69  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A4887  methyl-accepting chemotaxis protein I  50.52 
 
 
553 aa  265  3e-69  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C4939  methyl-accepting chemotaxis protein I  50.52 
 
 
553 aa  265  3e-69  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.188217  normal 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  49.49 
 
 
589 aa  265  3e-69  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  52.76 
 
 
551 aa  265  3e-69  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  52.63 
 
 
584 aa  265  3e-69  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  55.77 
 
 
584 aa  265  3e-69  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3580  methyl-accepting chemotaxis sensory transducer  49.66 
 
 
572 aa  265  4e-69  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
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