More than 300 homologs were found in PanDaTox collection
for query gene Lcho_1530 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_1531  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  70.64 
 
 
1019 aa  860    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.301691 
 
 
-
 
NC_010524  Lcho_1530  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  100 
 
 
890 aa  1799    Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.155082 
 
 
-
 
NC_008463  PA14_02220  putative chemotaxis transducer  39.25 
 
 
679 aa  410  1e-113  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.329962  normal 
 
 
-
 
NC_009656  PSPA7_0256  chemotaxis transducer  40.74 
 
 
679 aa  397  1e-109  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0728  histidine kinase, HAMP region: chemotaxis sensory transducer  40.11 
 
 
792 aa  372  1e-101  Dechloromonas aromatica RCB  Bacteria  normal  0.066629  normal 
 
 
-
 
NC_010524  Lcho_1532  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.92 
 
 
853 aa  367  1e-100  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.103077 
 
 
-
 
NC_010717  PXO_04751  chemotaxis protein  41.08 
 
 
698 aa  364  4e-99  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  40.86 
 
 
860 aa  363  7.0000000000000005e-99  Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_009831  Ssed_0184  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  41.44 
 
 
863 aa  359  9.999999999999999e-98  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0164  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.21 
 
 
1123 aa  354  4e-96  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  39.88 
 
 
767 aa  354  5e-96  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0111  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  38.15 
 
 
864 aa  349  1e-94  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3112  putative methyl-accepting chemotaxis sensory transducer  33.64 
 
 
1029 aa  347  5e-94  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0729  PAS  39.49 
 
 
945 aa  345  2e-93  Dechloromonas aromatica RCB  Bacteria  normal  0.0635035  normal 
 
 
-
 
NC_010524  Lcho_0333  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  44.38 
 
 
720 aa  340  8e-92  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008322  Shewmr7_1883  methyl-accepting chemotaxis sensory transducer  38.31 
 
 
656 aa  337  5.999999999999999e-91  Shewanella sp. MR-7  Bacteria  normal  normal  0.113479 
 
 
-
 
NC_009665  Shew185_2245  methyl-accepting chemotaxis sensory transducer  37.81 
 
 
664 aa  337  7e-91  Shewanella baltica OS185  Bacteria  normal  0.232427  n/a   
 
 
-
 
NC_008577  Shewana3_2216  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
657 aa  336  1e-90  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2091  methyl-accepting chemotaxis sensory transducer  38.31 
 
 
656 aa  335  2e-90  Shewanella sp. MR-4  Bacteria  normal  normal  0.684691 
 
 
-
 
NC_009997  Sbal195_2362  methyl-accepting chemotaxis sensory transducer  37.24 
 
 
664 aa  334  5e-90  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2100  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.03 
 
 
665 aa  333  1e-89  Shewanella baltica OS223  Bacteria  normal  0.328344  normal 
 
 
-
 
NC_009052  Sbal_2114  methyl-accepting chemotaxis sensory transducer  37.91 
 
 
657 aa  332  2e-89  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1294  methyl-accepting chemotaxis protein  39.13 
 
 
962 aa  329  2.0000000000000001e-88  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2123  methyl-accepting chemotaxis protein  39.92 
 
 
654 aa  329  2.0000000000000001e-88  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3993  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.37 
 
 
701 aa  326  1e-87  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.311816 
 
 
-
 
NC_004578  PSPTO_0912  methyl-accepting chemotaxis protein  63.54 
 
 
551 aa  326  2e-87  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0785  histidine kinase, HAMP region: chemotaxis sensory transducer  68.95 
 
 
551 aa  325  2e-87  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.367078  normal 
 
 
-
 
NC_007298  Daro_1143  histidine kinase, HAMP region: chemotaxis sensory transducer  60.68 
 
 
541 aa  323  8e-87  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0902  methyl-accepting chemotaxis sensory transducer  54.31 
 
 
550 aa  323  9.000000000000001e-87  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0151  methyl-accepting chemotaxis protein  36.71 
 
 
678 aa  319  2e-85  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1318  methyl-accepting chemotaxis sensory transducer  57.19 
 
 
555 aa  315  2.9999999999999996e-84  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_3799  methyl-accepting chemotaxis sensory transducer  54.93 
 
 
772 aa  312  2e-83  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010717  PXO_00039  chemotaxis protein  39.87 
 
 
775 aa  312  2e-83  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.371493  n/a   
 
 
-
 
NC_007954  Sden_3297  chemotaxis sensory transducer  57.48 
 
 
543 aa  311  4e-83  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1847  methyl-accepting chemotaxis sensory transducer  36.27 
 
 
793 aa  305  2.0000000000000002e-81  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.143361  normal  0.380239 
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  35.54 
 
 
797 aa  304  6.000000000000001e-81  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_009439  Pmen_1567  methyl-accepting chemotaxis sensory transducer  62.87 
 
 
547 aa  301  4e-80  Pseudomonas mendocina ymp  Bacteria  normal  0.0467505  normal 
 
 
-
 
NC_009675  Anae109_3837  methyl-accepting chemotaxis sensory transducer  53.16 
 
 
561 aa  297  5e-79  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.834659 
 
 
-
 
NC_009075  BURPS668_A0206  methyl-accepting chemotaxis protein  36.45 
 
 
793 aa  297  7e-79  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3761  methyl-accepting chemotaxis sensory transducer  54.9 
 
 
557 aa  296  1e-78  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3844  methyl-accepting chemotaxis sensory transducer  54.9 
 
 
556 aa  296  2e-78  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0158  chemotaxis protein  36.59 
 
 
779 aa  295  2e-78  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_0553  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  34.2 
 
 
888 aa  290  1e-76  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3704  methyl-accepting chemotaxis sensory transducer  56.63 
 
 
559 aa  289  1e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.183593  n/a   
 
 
-
 
NC_007760  Adeh_3897  methyl-accepting chemotaxis sensory transducer  55.64 
 
 
551 aa  287  5.999999999999999e-76  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.198365  n/a   
 
 
-
 
NC_011891  A2cp1_4039  methyl-accepting chemotaxis sensory transducer  55.64 
 
 
551 aa  287  5.999999999999999e-76  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3998  methyl-accepting chemotaxis sensory transducer  55.64 
 
 
550 aa  286  9e-76  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1160  methyl-accepting chemotaxis sensory transducer  56.62 
 
 
532 aa  281  3e-74  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1601  methyl-accepting chemotaxis sensory transducer  42.52 
 
 
1500 aa  277  8e-73  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1209  methyl-accepting chemotaxis sensory transducer  51.09 
 
 
659 aa  276  1.0000000000000001e-72  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.261932 
 
 
-
 
NC_011891  A2cp1_3671  methyl-accepting chemotaxis sensory transducer  54.35 
 
 
509 aa  275  3e-72  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.353813  n/a   
 
 
-
 
NC_007760  Adeh_2187  methyl-accepting chemotaxis sensory transducer  55.8 
 
 
553 aa  273  9e-72  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2874  methyl-accepting chemotaxis sensory transducer  53.11 
 
 
563 aa  273  1e-71  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.872696  normal  0.485865 
 
 
-
 
NC_011769  DvMF_2542  methyl-accepting chemotaxis sensory transducer  48.78 
 
 
597 aa  271  5e-71  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_004347  SO_2323  methyl-accepting chemotaxis protein  53.95 
 
 
646 aa  270  1e-70  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011891  A2cp1_1762  methyl-accepting chemotaxis sensory transducer  54.71 
 
 
553 aa  269  1e-70  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1691  methyl-accepting chemotaxis sensory transducer  54.71 
 
 
553 aa  269  1e-70  Anaeromyxobacter sp. K  Bacteria  normal  0.302444  n/a   
 
 
-
 
NC_008751  Dvul_2361  methyl-accepting chemotaxis sensory transducer  53.6 
 
 
652 aa  270  1e-70  Desulfovibrio vulgaris DP4  Bacteria  normal  0.128072  normal  0.188082 
 
 
-
 
NC_011145  AnaeK_3602  methyl-accepting chemotaxis sensory transducer  56.08 
 
 
509 aa  270  1e-70  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2573  methyl-accepting chemotaxis sensory transducer  58.47 
 
 
621 aa  267  5e-70  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.650368  n/a   
 
 
-
 
NC_011145  AnaeK_2477  methyl-accepting chemotaxis sensory transducer  58.47 
 
 
617 aa  267  5.999999999999999e-70  Anaeromyxobacter sp. K  Bacteria  normal  0.200364  n/a   
 
 
-
 
NC_013173  Dbac_2647  methyl-accepting chemotaxis sensory transducer  48.73 
 
 
554 aa  266  8.999999999999999e-70  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.910941  n/a   
 
 
-
 
NC_008609  Ppro_1608  methyl-accepting chemotaxis sensory transducer  53.74 
 
 
558 aa  266  8.999999999999999e-70  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1735  methyl-accepting chemotaxis sensory transducer  41.3 
 
 
868 aa  266  1e-69  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0621  methyl-accepting chemotaxis sensory transducer  50.17 
 
 
727 aa  266  1e-69  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.0173671 
 
 
-
 
NC_007760  Adeh_1380  methyl-accepting chemotaxis sensory transducer  57.6 
 
 
608 aa  265  2e-69  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.236828  n/a   
 
 
-
 
NC_007517  Gmet_2422  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  41.18 
 
 
1046 aa  265  3e-69  Geobacter metallireducens GS-15  Bacteria  normal  0.925436  normal 
 
 
-
 
NC_011891  A2cp1_1322  methyl-accepting chemotaxis sensory transducer  54.15 
 
 
538 aa  265  3e-69  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3513  methyl-accepting chemotaxis sensory transducer  54.8 
 
 
509 aa  265  4e-69  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.150611  n/a   
 
 
-
 
NC_013173  Dbac_1917  methyl-accepting chemotaxis sensory transducer  52.75 
 
 
677 aa  264  6e-69  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.134066  n/a   
 
 
-
 
NC_010814  Glov_1733  methyl-accepting chemotaxis sensory transducer  44.2 
 
 
823 aa  263  1e-68  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1280  methyl-accepting chemotaxis sensory transducer  32.38 
 
 
1048 aa  262  2e-68  Geobacter sp. M21  Bacteria  n/a    normal  0.0818053 
 
 
-
 
NC_013173  Dbac_1421  methyl-accepting chemotaxis sensory transducer  52.01 
 
 
676 aa  263  2e-68  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.45919  n/a   
 
 
-
 
NC_011145  AnaeK_1220  methyl-accepting chemotaxis sensory transducer  55.48 
 
 
538 aa  262  2e-68  Anaeromyxobacter sp. K  Bacteria  normal  0.307637  n/a   
 
 
-
 
NC_008609  Ppro_2710  methyl-accepting chemotaxis sensory transducer  47.84 
 
 
969 aa  261  4e-68  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2942  methyl-accepting chemotaxis sensory transducer  32.17 
 
 
1049 aa  260  7e-68  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_5777  methyl-accepting chemotaxis sensory transducer  50.52 
 
 
705 aa  257  8e-67  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.807181  normal  0.137814 
 
 
-
 
NC_002939  GSU1304  methyl-accepting chemotaxis protein  51.7 
 
 
566 aa  255  2.0000000000000002e-66  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1077  methyl-accepting chemotaxis sensory transducer  52.57 
 
 
690 aa  254  3e-66  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.317064  n/a   
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  39.12 
 
 
752 aa  255  3e-66  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_008751  Dvul_1207  methyl-accepting chemotaxis sensory transducer  45.81 
 
 
720 aa  255  3e-66  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.149931 
 
 
-
 
NC_012918  GM21_2772  methyl-accepting chemotaxis sensory transducer  44.23 
 
 
735 aa  254  4.0000000000000004e-66  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008789  Hhal_2163  methyl-accepting chemotaxis sensory transducer  34.67 
 
 
610 aa  254  4.0000000000000004e-66  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1294  methyl-accepting chemotaxis sensory transducer  40.9 
 
 
686 aa  254  5.000000000000001e-66  Geobacter sp. M21  Bacteria  n/a    hitchhiker  4.66893e-19 
 
 
-
 
NC_011146  Gbem_1482  methyl-accepting chemotaxis sensory transducer  44.23 
 
 
735 aa  254  7e-66  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1303  methyl-accepting chemotaxis protein  50.35 
 
 
494 aa  253  1e-65  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2944  methyl-accepting chemotaxis sensory transducer  43.85 
 
 
780 aa  251  4e-65  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2989  methyl-accepting chemotaxis sensory transducer  40.55 
 
 
1093 aa  250  9e-65  Geobacter uraniireducens Rf4  Bacteria  normal  0.653084  n/a   
 
 
-
 
NC_002939  GSU1140  methyl-accepting chemotaxis protein  42.04 
 
 
727 aa  249  2e-64  Geobacter sulfurreducens PCA  Bacteria  normal  0.664897  n/a   
 
 
-
 
NC_009483  Gura_2985  methyl-accepting chemotaxis sensory transducer  53.62 
 
 
576 aa  247  4.9999999999999997e-64  Geobacter uraniireducens Rf4  Bacteria  normal  0.293775  n/a   
 
 
-
 
NC_011989  Avi_3947  methyl-accepting chemotaxis protein  44.72 
 
 
619 aa  247  6.999999999999999e-64  Agrobacterium vitis S4  Bacteria  normal  0.412994  n/a   
 
 
-
 
NC_012918  GM21_1108  methyl-accepting chemotaxis sensory transducer  45.92 
 
 
685 aa  246  9.999999999999999e-64  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_1105  methyl-accepting chemotaxis sensory transducer  49.85 
 
 
563 aa  245  1.9999999999999999e-63  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_2401  methyl-accepting chemotaxis sensory transducer  47.4 
 
 
528 aa  246  1.9999999999999999e-63  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3308  methyl-accepting chemotaxis sensory transducer  47.51 
 
 
682 aa  244  5e-63  Magnetococcus sp. MC-1  Bacteria  normal  0.785168  normal 
 
 
-
 
NC_009483  Gura_2779  methyl-accepting chemotaxis sensory transducer  52.01 
 
 
566 aa  244  7e-63  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1191  methyl-accepting chemotaxis sensory transducer  42.43 
 
 
846 aa  244  7e-63  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2945  methyl-accepting chemotaxis sensory transducer  44.09 
 
 
780 aa  243  7.999999999999999e-63  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4817  methyl-accepting chemotaxis sensory transducer  58.37 
 
 
747 aa  243  9e-63  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00849638 
 
 
-
 
NC_008576  Mmc1_2401  methyl-accepting chemotaxis sensory transducer  54.69 
 
 
674 aa  242  2e-62  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.0000495749  normal  0.0928318 
 
 
-
 
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