More than 300 homologs were found in PanDaTox collection
for query gene Smal_3993 on replicon NC_011071
Organism: Stenotrophomonas maltophilia R551-3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011071  Smal_3993  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  100 
 
 
701 aa  1363    Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.311816 
 
 
-
 
NC_011071  Smal_1847  methyl-accepting chemotaxis sensory transducer  51.84 
 
 
793 aa  455  1.0000000000000001e-126  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.143361  normal  0.380239 
 
 
-
 
NC_010717  PXO_00039  chemotaxis protein  49.46 
 
 
775 aa  429  1e-119  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.371493  n/a   
 
 
-
 
NC_010717  PXO_00054  methyl-accepting chemotaxis protein  51.93 
 
 
797 aa  426  1e-118  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.276697  n/a   
 
 
-
 
NC_007912  Sde_3105  putative methyl-accepting chemotaxis sensory transducer  46.31 
 
 
767 aa  413  1e-114  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0164  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.52 
 
 
1123 aa  415  1e-114  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_02220  putative chemotaxis transducer  51.16 
 
 
679 aa  414  1e-114  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.329962  normal 
 
 
-
 
NC_009831  Ssed_0184  methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor  45.71 
 
 
863 aa  410  1e-113  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_3497  putative methyl-accepting chemotaxis sensory transducer  46.14 
 
 
860 aa  410  1e-113  Shewanella amazonensis SB2B  Bacteria  normal  0.19961  normal 
 
 
-
 
NC_007298  Daro_0728  histidine kinase, HAMP region: chemotaxis sensory transducer  48.88 
 
 
792 aa  409  1.0000000000000001e-112  Dechloromonas aromatica RCB  Bacteria  normal  0.066629  normal 
 
 
-
 
NC_009656  PSPA7_0256  chemotaxis transducer  52.16 
 
 
679 aa  409  1.0000000000000001e-112  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0729  PAS  50.97 
 
 
945 aa  398  1e-109  Dechloromonas aromatica RCB  Bacteria  normal  0.0635035  normal 
 
 
-
 
NC_009665  Shew185_2245  methyl-accepting chemotaxis sensory transducer  47.67 
 
 
664 aa  395  1e-108  Shewanella baltica OS185  Bacteria  normal  0.232427  n/a   
 
 
-
 
NC_009052  Sbal_2114  methyl-accepting chemotaxis sensory transducer  47.25 
 
 
657 aa  393  1e-108  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1883  methyl-accepting chemotaxis sensory transducer  47.13 
 
 
656 aa  393  1e-108  Shewanella sp. MR-7  Bacteria  normal  normal  0.113479 
 
 
-
 
NC_011663  Sbal223_2100  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.67 
 
 
665 aa  394  1e-108  Shewanella baltica OS223  Bacteria  normal  0.328344  normal 
 
 
-
 
NC_008577  Shewana3_2216  methyl-accepting chemotaxis sensory transducer  47.13 
 
 
657 aa  393  1e-108  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0111  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  45.82 
 
 
864 aa  395  1e-108  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_2362  methyl-accepting chemotaxis sensory transducer  47.46 
 
 
664 aa  393  1e-108  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2123  methyl-accepting chemotaxis protein  48.7 
 
 
654 aa  392  1e-107  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2091  methyl-accepting chemotaxis sensory transducer  47.13 
 
 
656 aa  391  1e-107  Shewanella sp. MR-4  Bacteria  normal  normal  0.684691 
 
 
-
 
NC_010717  PXO_00047  chemotaxis protein  60.06 
 
 
733 aa  368  1e-100  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1846  methyl-accepting chemotaxis sensory transducer  59.4 
 
 
755 aa  359  9.999999999999999e-98  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.422723  normal  0.381468 
 
 
-
 
NC_011071  Smal_3896  methyl-accepting chemotaxis sensory transducer  61.33 
 
 
706 aa  357  3.9999999999999996e-97  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.337027  normal  0.882129 
 
 
-
 
NC_010717  PXO_00041  chemotaxis protein  59.64 
 
 
752 aa  351  3e-95  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.292066  n/a   
 
 
-
 
NC_011071  Smal_3537  methyl-accepting chemotaxis sensory transducer  62.58 
 
 
843 aa  350  4e-95  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_011071  Smal_1169  methyl-accepting chemotaxis sensory transducer  57.31 
 
 
740 aa  350  5e-95  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0151  methyl-accepting chemotaxis protein  43.64 
 
 
678 aa  347  3e-94  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00043  chemotaxis protein  59.28 
 
 
705 aa  347  3e-94  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.51691  n/a   
 
 
-
 
NC_011071  Smal_1851  methyl-accepting chemotaxis sensory transducer  58.14 
 
 
745 aa  345  2e-93  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.195185 
 
 
-
 
NC_007912  Sde_3112  putative methyl-accepting chemotaxis sensory transducer  41.39 
 
 
1029 aa  344  2.9999999999999997e-93  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0206  methyl-accepting chemotaxis protein  43.67 
 
 
793 aa  344  2.9999999999999997e-93  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0158  chemotaxis protein  42.4 
 
 
779 aa  343  7e-93  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00046  chemotaxis protein  58.13 
 
 
753 aa  339  9.999999999999999e-92  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1530  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  40.37 
 
 
890 aa  328  2.0000000000000001e-88  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.155082 
 
 
-
 
NC_011071  Smal_3633  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.01 
 
 
845 aa  325  3e-87  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.522396 
 
 
-
 
NC_007520  Tcr_0553  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.61 
 
 
888 aa  322  9.999999999999999e-87  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_00045  chemotaxis protein  63.57 
 
 
691 aa  321  1.9999999999999998e-86  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.505093  n/a   
 
 
-
 
NC_008789  Hhal_2163  methyl-accepting chemotaxis sensory transducer  38.91 
 
 
610 aa  310  4e-83  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3007  methyl-accepting chemotaxis sensory transducer  53.01 
 
 
707 aa  297  4e-79  Stenotrophomonas maltophilia R551-3  Bacteria  normal  decreased coverage  0.00177393 
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  59.09 
 
 
622 aa  283  9e-75  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  44.99 
 
 
589 aa  282  2e-74  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  55.13 
 
 
597 aa  281  3e-74  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1531  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  37.47 
 
 
1019 aa  280  8e-74  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.301691 
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  54.25 
 
 
541 aa  278  2e-73  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  55.34 
 
 
559 aa  277  4e-73  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  54.13 
 
 
589 aa  277  5e-73  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4184  methyl-accepting chemotaxis sensory transducer  57.88 
 
 
680 aa  276  7e-73  Variovorax paradoxus S110  Bacteria  normal  0.12793  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  52.26 
 
 
566 aa  276  1.0000000000000001e-72  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  54.42 
 
 
583 aa  275  2.0000000000000002e-72  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_007952  Bxe_B0771  methyl-accepting chemotaxis sensory transducer  54.22 
 
 
519 aa  275  2.0000000000000002e-72  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  57.34 
 
 
586 aa  273  7e-72  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  53.94 
 
 
572 aa  272  1e-71  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  54.18 
 
 
579 aa  273  1e-71  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  57.43 
 
 
566 aa  272  1e-71  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_010676  Bphyt_4450  methyl-accepting chemotaxis sensory transducer  53.9 
 
 
519 aa  272  2e-71  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.000313766  normal 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  56.03 
 
 
584 aa  271  2.9999999999999997e-71  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4186  methyl-accepting chemotaxis sensory transducer  58.25 
 
 
577 aa  271  2.9999999999999997e-71  Variovorax paradoxus S110  Bacteria  normal  0.494266  n/a   
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  57.14 
 
 
598 aa  271  2.9999999999999997e-71  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_007974  Rmet_5250  methyl-accepting chemotaxis protein, sensory transducer  57.25 
 
 
677 aa  271  4e-71  Cupriavidus metallidurans CH34  Bacteria  normal  0.0837898  normal  0.0130353 
 
 
-
 
NC_012880  Dd703_2488  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.06 
 
 
512 aa  269  1e-70  Dickeya dadantii Ech703  Bacteria  normal  0.0783891  n/a   
 
 
-
 
NC_007974  Rmet_5641  methyl-accepting chemotaxis sensory transducer  61.72 
 
 
519 aa  269  1e-70  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1642  methyl-accepting chemotaxis protein  56.45 
 
 
557 aa  268  2e-70  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  56.84 
 
 
525 aa  268  2e-70  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_010465  YPK_1753  methyl-accepting chemotaxis sensory transducer  56.45 
 
 
557 aa  268  2e-70  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_4161  methyl-accepting chemotaxis sensory transducer  50 
 
 
628 aa  268  2.9999999999999995e-70  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  55.23 
 
 
547 aa  268  2.9999999999999995e-70  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
CP001509  ECD_01378  methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor  55.14 
 
 
546 aa  267  4e-70  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2225  methyl-accepting chemotaxis sensory transducer  55.14 
 
 
546 aa  267  4e-70  Escherichia coli DH1  Bacteria  normal  0.213228  n/a   
 
 
-
 
NC_012917  PC1_1208  methyl-accepting chemotaxis sensory transducer  52.33 
 
 
555 aa  268  4e-70  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000392698  n/a   
 
 
-
 
NC_011353  ECH74115_2026  methyl-accepting chemotaxis protein III  54.48 
 
 
470 aa  268  4e-70  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000000214401 
 
 
-
 
NC_009801  EcE24377A_1600  methyl-accepting chemotaxis protein III  55.14 
 
 
546 aa  267  4e-70  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01390  hypothetical protein  55.14 
 
 
546 aa  267  4e-70  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  53.09 
 
 
567 aa  267  4e-70  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1503  methyl-accepting chemotaxis protein III  54.14 
 
 
546 aa  268  4e-70  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  56.1 
 
 
557 aa  267  4e-70  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  52.46 
 
 
562 aa  267  4e-70  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_010468  EcolC_2238  methyl-accepting chemotaxis sensory transducer  54.14 
 
 
546 aa  267  5e-70  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6319  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  58.3 
 
 
601 aa  267  5e-70  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1753  methyl-accepting chemotaxis protein III  55.14 
 
 
546 aa  267  5e-70  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  2.79367e-17 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  54.74 
 
 
578 aa  266  8.999999999999999e-70  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  56.95 
 
 
579 aa  265  1e-69  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_013421  Pecwa_3123  methyl-accepting chemotaxis sensory transducer  58.24 
 
 
555 aa  266  1e-69  Pectobacterium wasabiae WPP163  Bacteria  decreased coverage  0.000142041  n/a   
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  60.24 
 
 
569 aa  265  1e-69  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_1951  methyl-accepting chemotaxis sensory transducer  56.99 
 
 
508 aa  266  1e-69  Acidovorax sp. JS42  Bacteria  normal  normal  0.747742 
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  54.74 
 
 
580 aa  266  1e-69  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  50 
 
 
543 aa  265  2e-69  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1816  methyl-accepting chemotaxis sensory transducer  53.29 
 
 
651 aa  265  2e-69  Dickeya dadantii Ech703  Bacteria  normal  0.700193  n/a   
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  56.71 
 
 
559 aa  264  4e-69  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  56.94 
 
 
559 aa  264  4e-69  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  57.79 
 
 
542 aa  264  4e-69  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4443  methyl-accepting chemotaxis sensory transducer  49.84 
 
 
630 aa  264  4e-69  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5868  methyl-accepting chemotaxis sensory transducer  52.32 
 
 
541 aa  264  4.999999999999999e-69  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  58.56 
 
 
650 aa  264  4.999999999999999e-69  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_012912  Dd1591_0395  methyl-accepting chemotaxis sensory transducer  50.84 
 
 
556 aa  264  4.999999999999999e-69  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_0345  methyl-accepting chemotaxis sensory transducer  56.91 
 
 
547 aa  263  6e-69  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B3808  histidine kinase, HAMP region: chemotaxis sensory transducer  51.79 
 
 
569 aa  263  6e-69  Ralstonia eutropha JMP134  Bacteria  normal  0.880796  n/a   
 
 
-
 
NC_007651  BTH_I3209  methyl-accepting chemotaxis protein, putative  55.48 
 
 
601 aa  263  6e-69  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3286  methyl-accepting chemotaxis sensory transducer  54.23 
 
 
499 aa  263  6e-69  Rhodoferax ferrireducens T118  Bacteria  normal  0.729026  n/a   
 
 
-
 
NC_011992  Dtpsy_2969  methyl-accepting chemotaxis sensory transducer  53.5 
 
 
550 aa  263  6e-69  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
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