| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew185_2245 |
|---|
| Symbol | |
|---|
| ID | 5373642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella baltica OS185 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009665 |
|---|
| Strand | - |
|---|
| Start bp | 2672049 |
|---|
| End bp | 2674043 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640830459 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001366446 |
|---|
| Protein GI | 153000765 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.232427 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCT TCAAATTTTT TGGCAATGAT GAAGCGCGTG AACAAAGGGA TGAAGAGCGT
CAGCGCTATT TTCAGCTACT CGATAACAGT GGCAACAGCT TCATGATTGC TGACAGTCAG
CGCAATATCA TCTATGCGAA TAAAGCCGTC GTCCGCTTGC TTCAAGAGGC CGAGGACGAT
ATTCGTAAAG AGTTACCCCA ATTCTCGGTC GCTAAACTGA TCGGCAGTAA TATTGATATT
TTCCATAAAA ATCCAGCGCA TCAACGCAAC CTATTAGAGC GTTTGACTCA GTCCCATACT
GCACAAATCA CCATTGGCAA GCGTACCTTT AGGTTGATTC TGACGCCGAT TATCACGGCT
GAAAATAAGC ATTTAGGCAC AGGTGTCGAG TGGATAGATC GCACCGAAAG TATTGAAGCC
GAGCGCGCAA CCCAGCGCAT TATGGAAGCG CTCAACAATA CCAGTACCAA CGTCATGATC
GCCGATGCTA ACCGTACGAT CATTTATATG AATCGCTCGG TCGAAGCCAT GTTACGCCAG
TCTGAACACG AAATTAGGCA GGCCTTACCA CACTTTTCCG TGGATAAAAT CCTCGGCAGC
TCGATGGATA TCTTCCATCG TAATCCTGCC CACCAAGCGA GTTTACTTGA TAAATTAGAC
CGTAAATATG AATCGCTGAT TAAGGTCGCT AGTTGCCATT TCCGTTTAAC GGCTAGCCCC
ATAGTGTCAA AAGAAGGCGA GCGCTTAGGG ACTGTGGTTG AATGGCTCGA CCGCACCATT
GAAGTGCAAA CTGAGCAAGA GATTTCCCGC ATTGTGACCG CAGCAGCAGC GGGTGATTTC
TCCCAAAGGG CGGACACCGA AGGCAAGCAA GGTTTCTTCC TGATGCTGGC GAACAACTTG
AATTCGTTAA TTGAAACCTC GGACCGTGGA CTGCAAGATG TGGCGCGCGT ACTGATGGCG
CTGGCGGATG GCGATCTGAC TACCCGCATT TATAACGATT ATGAAGGCAC TTTTAATGAT
TTGAAAAACT ACTCAAATCA AACCGCTGAA AAGCTATCCT TCATGATCCA AGATATTCAA
CGAGCGGCGG ATACCATTAA TACTGCCTCA GCAGAAATTG CCCAAGGCAA CGCCGATTTA
TCCAGCCGCA CCGAAGAGCA AGCTTCGAGC CTAGAAGAAA CTTCCGCCAG CATGGAGGAA
CTCACAGGTA CAGTGAAACT CAATGCGGAT AACGCCAGCC AAGCCAATGC CTTAGCCTCT
AAAGCTTCGG AAGTGGCAGT GGACGGTGGT GAGCTTATCC AGCAAGTCGT ACAGACCATG
GCATCGATTA ATGAATCGGC GCGTAAGATT GCCGACATCA TTGGTGTTAT CGATGGCATT
GCATTCCAAA CCAATATCTT AGCGCTTAAT GCCGCTGTTG AAGCTGCGCG GGCGGGTGAG
CAAGGGCGTG GCTTTGCTGT AGTCGCATCA GAAGTGCGCA GTTTAGCCCA ACGCTCGGCC
AATGCCGCTA AAGATATCAA GGCATTGATC TCGGATTCCG TGTCTAAAAT CGAGAGTGGC
AACAGCCTTG TCGGTAAGTC CGGCGATACC ATGAAGGAAA TCGTCATCGC CATTAAACGG
GTGAACGACA TCATGGCGGA AATCGCCTCA GCGTCTAATG AGCAGGCAAT CGGTATTGAT
GAAATCAGCA AAGCTGTGGT GCAAATGGAT GAAATGACAC AGCAAAATGC GGCATTGGTT
GAAGAAGCGG CCGCCGCCGC TGAAAGCATG CAATCCCAAG CACAGCAACT CTCAGACAGT
GTTGCAAGTT TTCGTGTAGA CGATGAGGAT GAAGCCCCAA GGCACAGTAA CGCGCGATTA
GCAGCGCCTA AAGCGAAAGC GGTGAAACCC CTTAAGCAGC TACAACCTGT AGCAAGAGCA
AGGGCTACAG ATAAACCTAA AACCAATGCG ATGAAGCCCA TAAAGCAAGA TCAAGATGAA
TGGGAAGAAT TTTAA
|
|---|
| Protein sequence | MSIFKFFGND EAREQRDEER QRYFQLLDNS GNSFMIADSQ RNIIYANKAV VRLLQEAEDD
IRKELPQFSV AKLIGSNIDI FHKNPAHQRN LLERLTQSHT AQITIGKRTF RLILTPIITA
ENKHLGTGVE WIDRTESIEA ERATQRIMEA LNNTSTNVMI ADANRTIIYM NRSVEAMLRQ
SEHEIRQALP HFSVDKILGS SMDIFHRNPA HQASLLDKLD RKYESLIKVA SCHFRLTASP
IVSKEGERLG TVVEWLDRTI EVQTEQEISR IVTAAAAGDF SQRADTEGKQ GFFLMLANNL
NSLIETSDRG LQDVARVLMA LADGDLTTRI YNDYEGTFND LKNYSNQTAE KLSFMIQDIQ
RAADTINTAS AEIAQGNADL SSRTEEQASS LEETSASMEE LTGTVKLNAD NASQANALAS
KASEVAVDGG ELIQQVVQTM ASINESARKI ADIIGVIDGI AFQTNILALN AAVEAARAGE
QGRGFAVVAS EVRSLAQRSA NAAKDIKALI SDSVSKIESG NSLVGKSGDT MKEIVIAIKR
VNDIMAEIAS ASNEQAIGID EISKAVVQMD EMTQQNAALV EEAAAAAESM QSQAQQLSDS
VASFRVDDED EAPRHSNARL AAPKAKAVKP LKQLQPVARA RATDKPKTNA MKPIKQDQDE
WEEF
|
|---|
| |