| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1531 |
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| Symbol | |
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| ID | 6161683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 1618210 |
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| End bp | 1621269 |
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| Gene Length | 3060 bp |
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| Protein Length | 1019 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641664286 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001790564 |
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| Protein GI | 171058215 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.301691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAGT CCTTCAAGCC CAAGGTTGCC GCCGCCGAGC GCGGCCCCTG GCTCTTTGCC
CCGGTGGCGC CGCTGCTGCG GCGCATGACG CTGGGCGCCA AGTTCGCGCT GGTGGCCACC
GTGCTGACGG TACCGCTGGT GGCGATGCTG GGCACCGTGA TCGTCAAGGC CAACGCCGAC
CTGGCCTACA CCCACGGTGA ACTCGCCACG GCCCCGCTGG CCAATGCGCT GACCGACCTG
GTCGATCCCC TGCACGCCTA CCGCGCGGTG GTGCAACTGG TGCACGCCAA CGTGGAAGGT
GCCGACTCGA TGCTGGCCGA CAGCCGCGGC AAGCTCGAAG CCGAGATGGC CGAGCTCGAC
CAGGTGGTGG CGGCGGACAG CACCTTCGAC CTGGCGCCGC AATGGAAGAT CACGCGCGAA
AAGATGCAGC GTGTGCTGCA GTCGGGCACC CAGGGCAGCC CGGTCGAACT GGCCCGCCAG
TTCGACGACA TCAGCAACGA CGCCGTCACG CTGACCTACA AGGTGCTCGA CAAGTCGGGC
ATCCTGCTCG AACCGGACGC CGGGCCGTAT TTCCTGCAGG ACGCGGCCTT CAACCGCATG
GCGCCGTTCC TGGAGTCGCT GTCACTGATG CGCGACACGG CCGTCAACGC CGTCGGACGT
GGCAACTGGG CCCCCGAAGA CATCAGCCGG CTGGAAGCCC AGCAGCATGA GCTGAACCTC
ACCCGGCACG CCCTGGAGCG CGCGGTCGAC GCCTATGTCG GCAGCGGTGC GCAGGCCCCG
CAAGGCTGGG CCGAAGGGAT GGCCGCGGTC GAAAACTTCA GCGCCAAGAT CCGTGCGATG
GCCGTGGCCG GCCCGGCCCG GCAGGATCCG CTGGCCCTGT TCAGCAGCGG CACCGATGTG
CAGGAGCGGA TGCTCGAGGT CCACGACACG CTGGTCACGC AGTTCTCCGC CGAGCTGCAG
GCTCGCGTCG ACCGGGTCGA AAGACAACGC GCCACGATGG CGGGACTGTC GGCGCTGGGC
CTGCTGGGTG CGCTCTATCT CTACCTCGCC GCCGTCGGCT CGATCCGCCG CTCGGCGCGA
CAGCTGCAGG CCGACGCCGG CCGCATCGCC GCCGGTGAAC TCGACCAGCC GGTGCACGCC
ACCGGCAAGG ACGAATTCGC TCAGATCGCC GCCCGCTTCG AGCAGGCGCG CGGCACGCTG
ATGCAGCTCA CCGCCGACAT GAACCACATG TCGTCCGAAC ACGACCGCGG CGAGATCGAC
GCCACCATCG ATGCGCGGCG CTATGCCGGC GGCTACAGCC GCATGGCCGA CGGCATCAAC
ACGATGGTGG CCGGTCACCT GCAGACGCAG CAGAAGGCGC TGACGGTGGT GCAGGCCTTC
GGCGAAGGCC ACTTCGACGC GCCGCTGGAA ACCTTCCCCG GCAAGAAGCG CTTCGTCAAC
GACGCCATCG AGCCGGTGCG CGCCCGCCTG CGCGAAGCGG CCGTGGCCGC CGCCGAGAAC
CTGCGCATCC GCATGGCACT CGACGGCGTG CCCAGCGCCG TGCTGATCGC CGACGGCGAA
GGCGCCACGC GCTACGCCAA CCGGGCGGCC CAGGCCCTGT TCAGCCGCCA TGAGGACGCG
ATCGCCCGCG TGGTGCCGAA CTTCAGCGCC GCGCGCGTGA TCGGCAGCCC GGTCGAACAG
CTCACCCGCC CGCTGGGCCT GCCCGTCAAC CTGATGCACA GCCTGCGCAG CCCGGTGCGC
AGCGAGTCCC TCGCCGGCAG CCGCACGCTC GCGCTCACCG CCAGCCCGAT CGACAACCAG
GCCGGCGTGC GCACCGGGGT GGTGATCGAG CTGCTCGATC GCACCGAAGA AGTCAGCCTC
GAACAGGCGA TCACCGGCGT GGTGCAGAAC GCCGCGCGCG GCGACTTCAG CCAGCGCCTG
GACATGGCCG AGGCCAGCGG CTTCTTCAAG CTGCTGGGCA GCGGCATCAA CGACCTGGTG
GGCAGCACCG AGCGCAACCT CGACACCTTC AGCGCCGCGC TGGCGCGCAT CTCCGACGGC
GACCTCAGCC GCAGCGTCGA GGGCGATTTC GAGGGCATCT TCGAGCGCCT GCAGGGCGAC
CTCAACCAGA TGAGCGCGCA GCTGGTGTCG ACCATCTCGC AGGTCAACTC GGCCGCCGCG
TCGCTGACCT CGGCGGCCAA CCAGGTCTCG AGCACCTCGC AGTCGCTGTC GCAGGCCGCC
TCCGAGCAGG CCGCCAGCAT CGAGCAGACC AGCGCCTCGC TGCAGGAGAT GGCCGCCTCG
GTCAAGCAGA ACGCCGACAA CGCCCACATG ACCGACGGCA TGGCCACCCA GGCCGCCCGC
GAGGCCACCG ACGGTGGCGC CGCGGTGGCG CAGACGGTCG AGGCGATGAA GGCGATCGCC
ACGCGCATCT CGATCATCGA CGACATCGCC TACCAGACCA ATCTGCTGGC GCTCAACGCC
GCCATCGAGG CCGCCCGTGC GGGCGACCAC GGCAAGGGCT TCGCGGTGGT CGCCGCCGAG
GTGCGCAAGC TCGCCGAGCG CAGCCAGGTG GCCGCCCAGG AGATCGGCCA GCTCGCCGGT
TCGAGCGTGA GGATGGCCGA GAAGGCCGGC TCGCTGCTCG GACAGATGGT GCCCTCGATC
AACAAGACCA GCGAGCTGGT GCAGGAGATC GCCGCCGCCT CGGGCGAGCA GTCGGGCAGC
GTCACTCAGA TCAACCAGGC GATGGAGCAT GTCAACGGCT CGACGCAGCA GAACGCTTCG
GCGGCCGAAG AACTCTCGGC CACCGCCGAG GAACTGTCGG CGCAGGCCAC GCAGCTGCAG
GAGCTGATGG CGTTCTTCCA GCTGCAGGGC GAATCGGCCC CACCGCCGAT GCCGATTCGG
GCCAACAAGC CGGCCGTCGC CAAGAGCCCG CGGGCATCGA GCAGCGGCCA CCTCGCGCCC
CATCGCAGCA CGGCCAGCCC GGCGCGCAAG AGCGTGACCT CGCACCCGCG CGCCAAGACC
GGCAACGGCT CGGGCTCCTG GGCTGACGTG GTCGACGAAG CCTGCTTCAC CAACTTCTGA
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| Protein sequence | MTQSFKPKVA AAERGPWLFA PVAPLLRRMT LGAKFALVAT VLTVPLVAML GTVIVKANAD
LAYTHGELAT APLANALTDL VDPLHAYRAV VQLVHANVEG ADSMLADSRG KLEAEMAELD
QVVAADSTFD LAPQWKITRE KMQRVLQSGT QGSPVELARQ FDDISNDAVT LTYKVLDKSG
ILLEPDAGPY FLQDAAFNRM APFLESLSLM RDTAVNAVGR GNWAPEDISR LEAQQHELNL
TRHALERAVD AYVGSGAQAP QGWAEGMAAV ENFSAKIRAM AVAGPARQDP LALFSSGTDV
QERMLEVHDT LVTQFSAELQ ARVDRVERQR ATMAGLSALG LLGALYLYLA AVGSIRRSAR
QLQADAGRIA AGELDQPVHA TGKDEFAQIA ARFEQARGTL MQLTADMNHM SSEHDRGEID
ATIDARRYAG GYSRMADGIN TMVAGHLQTQ QKALTVVQAF GEGHFDAPLE TFPGKKRFVN
DAIEPVRARL REAAVAAAEN LRIRMALDGV PSAVLIADGE GATRYANRAA QALFSRHEDA
IARVVPNFSA ARVIGSPVEQ LTRPLGLPVN LMHSLRSPVR SESLAGSRTL ALTASPIDNQ
AGVRTGVVIE LLDRTEEVSL EQAITGVVQN AARGDFSQRL DMAEASGFFK LLGSGINDLV
GSTERNLDTF SAALARISDG DLSRSVEGDF EGIFERLQGD LNQMSAQLVS TISQVNSAAA
SLTSAANQVS STSQSLSQAA SEQAASIEQT SASLQEMAAS VKQNADNAHM TDGMATQAAR
EATDGGAAVA QTVEAMKAIA TRISIIDDIA YQTNLLALNA AIEAARAGDH GKGFAVVAAE
VRKLAERSQV AAQEIGQLAG SSVRMAEKAG SLLGQMVPSI NKTSELVQEI AAASGEQSGS
VTQINQAMEH VNGSTQQNAS AAEELSATAE ELSAQATQLQ ELMAFFQLQG ESAPPPMPIR
ANKPAVAKSP RASSSGHLAP HRSTASPARK SVTSHPRAKT GNGSGSWADV VDEACFTNF
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