| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_1530 |
|---|
| Symbol | |
|---|
| ID | 6161682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | - |
|---|
| Start bp | 1615460 |
|---|
| End bp | 1618132 |
|---|
| Gene Length | 2673 bp |
|---|
| Protein Length | 890 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641664285 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_001790563 |
|---|
| Protein GI | 171058214 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.155082 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAACCC ATTCCCCCCT GCCCTCCGGC CCCGCGGCCC TGAGCCGACG CCTGTCGATC
ACCTGGAAGC TCTTCGTGGG TGCCGCACTG CCGGTGCTGA TGATCGCGGC CTTCGCAGCG
TGGCTCTCGT TCACGCTCGC CAACCTGCGC CAGCACGCGC AGGTGGCCGT GCCGGCCGCG
GTGGAGTTCG CCCTGCTCGG CAAGGACATG CAGCGCGACG TGGTGCAGGT GCAGCAGTTC
CTGTCGGACG TGTCGGCCAC CCGCGGCGAG GACGGCCTGG ACGACGGCTT CACCCAAGCC
GCCAGGCACA AGGACGCCTT CGTCGCCGGC ACGGAGCGTT TCCGCACCGC GCTGAAGGCG
CGCGAGGCTG GCGAACAGCT CGCCGCGCTC GACCGGGTGC GCGCGCATTT CGACACCTAC
TACGACACCG GCGTGGCGAT GGCGCGGGCC TACGTCAAGG GTGGCCCGGC CGAAGGCAAC
GCGCTGATGC CGCAGTTCGA CAAGGCCAGC GCCGACCTGC AGGCGAGCAT GGAGGCCTTC
ATCGGCGTCG AAGCGGGCCT GCTGCAAGCC GAGACCACCC AGGTCGGCCA GATGGTCGAG
TCGATGACCC ACCTGTCGCT GGCGCTGTGC GTGGCAGTCG CGCTGGGCAC CGGCCTGCTG
AGCTGGCTGA TCGCGCGCAG CATCACGCGC CCGCTGCACC GCGTGCAGAA GGCCTCCGCC
GATATCGCGG CGGGCCGGCT CGATGCGCCG CTGCAGCTCG ATGGCCGCGA TGAACTGGCC
CGGCTGGCGC AGTCGGTCGA GCAGATGCGC AGCACCGTGC GCGGCTTCAT CACCGAGGTC
AACACGATGT CGGCCGAACA CGAACGCGGC GACATCGACG CGACGATCCC GTCCGACCGC
TTTGCCGGCG AGTACCGCGC GATGGCCGAG GGCGTCAACA CGATGGTGCG CAACCACATC
GAGACCAAGA AGATGGCGAT GCGTTTCGTG GCGCAGTTTG CCGGCGGCGA TTTCAGCGGC
GAGGTGCCGT GCCTGCCGGG CAAGAAGGCC TTCATCAAAG AGACGCTCGA ACAGACCCGC
GCCCGCCTGC GCGAAGCCGC CGACGCCGCC GCCGAGAACC TGCGCATCCG CCTGGCGCTC
GACGGCGTGC CCAGCGCGGT GCTGATCGCC GATTCGGACA ACGTGATCCG CTACGCCAAC
CAGTCGGTCA CCGCCCTGCT CGGCCGCATC GAGGCCGATC TGCGCACCGT GCTGCCGAAC
TTCGATGCAT CGAAGGTGGT GGGCGCGAAC TTCGACATCT TCCACAAGAA TCCGGCACAC
CAGCGCAAGC TGGTCGAGTC GCTGCAGGAC CCGCATCGTT CGCAGTGGAA GTTCGGCGAA
CGCACCATCA GCCTGGTGGC CAGCCCGATC CACGACCACC AGGGCCGGCG TTCCGGCGCG
GTGCTGGAGT GGCAGGACCG CACCGAAGAA ACCCGGCTCG AAGAAGCGGT CACGGCGGTG
GTGCAGAGCG CCGCGCGCGG CGACTTCAGC CAGCGCCTGG ACATGGCCGA GGCCAGCGGC
TTCTTCAAGC TGCTGGGCAG CGGCATCAAC GACCTGGTGG GCAGCACCGA GCGCAACCTC
GACACCTTCA GCGCCGCGCT GGCACGCATC TCCGACGGCG ACCTCAGCCG CAGCGTCGAG
GGCGATTTCG AGGGCATCTT CGAGCGCCTG CAGGGCGATC TCAACCAGAT GAGCGCGCAG
CTGGTGTCGA CCATCTCGCA GGTCAACTCG GCCGCCGCGT CGCTGACATC GGCGGCCAAC
CAGGTCTCGA GCACCTCGCA GTCGCTGTCG CAGGCCGCCT CCGAGCAGGC CGCCAGCATC
GAGCAGACCA GCGCCTCGCT GCAGGAGATG GCCGCCTCGG TCAAGCAGAA CGCCGACAAC
GCCCACATGA CCGACGGCAT GGCCACCCAG GCCGCCCGCG AGGCCACCGA CGGTGGCGCC
GCGGTGGCGC AGACGGTCGA GGCGATGAAG GCGATCGCCA CGCGCATCTC GATCATCGAC
GACATCGCCT ACCAGACCAA TCTGCTGGCG CTCAACGCCG CCATCGAGGC CGCCCGTGCG
GGCGACCACG GCAAGGGCTT CGCGGTGGTC GCCGCCGAGG TGCGCAAGCT CGCCGAGCGC
AGCCAGGTGG CCGCGCAGGA GATCGGCCAG CTCGCCGGTT CGAGCGTGAA GATGGCCGAG
AAGGCCGGCT CGCTGCTCGG ACAGATGGTG CCCTCGATCA ACAAGACCAG CGAGCTGGTG
CAGGAGATCG CCGCCGCCTC GGGCGAGCAG TCGGGCAGCG TCACTCAGAT CAACCAGGCG
ATGGAGCATG TCAACGGCTC GACGCAGCAG AACGCTTCGG CGGCCGAGCA GTTGTCGGCC
ACGTCGGAAG AACTGTCGGC ACAAGCCACC CAATTGCAGG AATTGATGGC GTTCTTCCAA
TTGCAGAATG ACGACGTGGT CATCACCGGC AACCGCCGGG CAGCCGGCAA CCCCGGTGTC
CGCACGCTCG AGCCGCAACC GCACATGAAC CCCCGCACGC CAGCCAGAGC GCCCGTCACG
GCACCTCGCG CCAACACGCG CCCGGCTGCG ACCCACAAGG CCCGGCAAGG CTCGGGTGCG
TGGGCCGATG TGGTCGACGC AGGCCGCTTC TGA
|
|---|
| Protein sequence | MTTHSPLPSG PAALSRRLSI TWKLFVGAAL PVLMIAAFAA WLSFTLANLR QHAQVAVPAA
VEFALLGKDM QRDVVQVQQF LSDVSATRGE DGLDDGFTQA ARHKDAFVAG TERFRTALKA
REAGEQLAAL DRVRAHFDTY YDTGVAMARA YVKGGPAEGN ALMPQFDKAS ADLQASMEAF
IGVEAGLLQA ETTQVGQMVE SMTHLSLALC VAVALGTGLL SWLIARSITR PLHRVQKASA
DIAAGRLDAP LQLDGRDELA RLAQSVEQMR STVRGFITEV NTMSAEHERG DIDATIPSDR
FAGEYRAMAE GVNTMVRNHI ETKKMAMRFV AQFAGGDFSG EVPCLPGKKA FIKETLEQTR
ARLREAADAA AENLRIRLAL DGVPSAVLIA DSDNVIRYAN QSVTALLGRI EADLRTVLPN
FDASKVVGAN FDIFHKNPAH QRKLVESLQD PHRSQWKFGE RTISLVASPI HDHQGRRSGA
VLEWQDRTEE TRLEEAVTAV VQSAARGDFS QRLDMAEASG FFKLLGSGIN DLVGSTERNL
DTFSAALARI SDGDLSRSVE GDFEGIFERL QGDLNQMSAQ LVSTISQVNS AAASLTSAAN
QVSSTSQSLS QAASEQAASI EQTSASLQEM AASVKQNADN AHMTDGMATQ AAREATDGGA
AVAQTVEAMK AIATRISIID DIAYQTNLLA LNAAIEAARA GDHGKGFAVV AAEVRKLAER
SQVAAQEIGQ LAGSSVKMAE KAGSLLGQMV PSINKTSELV QEIAAASGEQ SGSVTQINQA
MEHVNGSTQQ NASAAEQLSA TSEELSAQAT QLQELMAFFQ LQNDDVVITG NRRAAGNPGV
RTLEPQPHMN PRTPARAPVT APRANTRPAA THKARQGSGA WADVVDAGRF
|
|---|
| |