| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0333 |
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| Symbol | |
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| ID | 6160564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 361951 |
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| End bp | 364113 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641663082 |
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| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
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| Protein accession | YP_001789373 |
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| Protein GI | 171057024 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAGC ACCAACCCTC CTGGATCGCC CGACTCCTCA TCGGCGCCGA ACTCCGCCAG
GCCGCCGCCG AGGCGCAGAA GAACGAACAG GCGCGCGCCG ACGCCGAATC CGCGCTGGCG
CAGGTGAAGG CCCGGCTGGC CGAGGTCGAG TCCGAGCTGA AGGTGCGCAC CGACATCATG
AACGTGACGA GCATCGTCTC GGAGTCGGAC AAGAAGGGCG ACATCCTCAG CATCAACGCC
AAGTTCTGCG AGGTCTCGAA GTACAGCCGC GACGAGCTGA TCGGGCGCCC GCACAACACC
ACGCGCCACC CCGACATGCC CAAGGAGACC TTCAAGCAGC TGTGGCAGAC CATCGGCCGC
GGCGACACCT TCCGCGGCAT CATCAAGAAC CGCGCCAAGG ACGGCACGCC GTACTACGTC
GACGCGGTGG TGGCGCCGAT CCTGGGCGAG AACGGCAAGC CGATGAAGTA CCTCGGCGTG
CGCTACGACA TCACCGAGGC CGAGATCGAG CGCCAGAACG CCCGCGGCAT CCTCGGCGCC
ATCGACGTGT CGTACGCCTA CATCGAATTC GACCTGCGCG GCCAGGTGCT GCAGGCCAAT
GCCAACTTCC TGCAGCTGAT GGGCTACCGG CTCGACGAGG TGGTCGGCCA CCACCACCGC
ATGTTCGTCG ACCCGGCGCA TGCGGCCACG CCGGCCTACG ACAACTTCTG GCGCGACCTC
AATGCCGGCA AGCCGCAGAG CGAGGTCTTC AAGCGCATCA CCAAGGCCGG CCGCGAGGTC
TGGATCCAGG CCATCTACGC GCCGGTCAAC GACGAGATGG GCCGGGTGGT CAAGATCGTC
AAGATCGCCA CCGACGTGAC CCGCGAGGTC AGCGCCAACA ACATGCTGCG CCAGGCCGTC
GAGCAGGCGC AGGCCGTGAC CGCCGCGGCG CGCGACGGCG ACCTGACGCA GCGCATCCCG
CTCGAAGGCA AGAGCGGCCC GATCGAGGCG CTGTGCAGCG GCGTCAACTC GCTGATGGAG
ACCACCTCGG TGATCTCGGC CGACGTCGGC CGGGTGCTGG CCGCACTCGC CGCGGGCGAC
CTGTCGCAGC GCATCACGCG CGACTACGCC GGCACCTTCG GCCGGCTCAA GGCCGATGCC
AACGCCACCA GCGAGGCGCT GTCGGGGATC ATCGAGGACG TCGGCCGGGT GTTCTCGGGC
CTGGCCGGCG GCGACCTGTC GCAGCGCATC GACCGCGACG CCCAGGGCAT CTTCGACCAG
GTCAAGCAGG ACGCCAACTC GACCGGCGAC AAGCTCGCCA GCATCATCGA CGAGGTGCGC
GGCGCCGCCG ACCAGCTCAC CAGCGCGGCC AGCCAGGTCA GCGCCACGGC GCAGTCGCTG
TCGCAGGCGG CCAGCGAGCA GGCCGCGTCG GTGGAGGAAA CCACCGCGTC GATCGAGCAG
ATGTCGGCCT CGATCTCGCA GAACAGCGAC AACGCCAAGG TCACCGACGG CATGGCCACC
AAGGCCTCGA AGGAAGCCGG CGAGGGTGGC GAGGCGGTGA CGCAGACCGT CAGGGCGATG
AAGCAGATCG CCGCCAAGAT CAGCATCGTC AACGACATCG CCTACCAGAC CAACCTGCTG
GCGCTGAACG CGGCGATCGA GGCCGCGCGG GCCGGCGAAC ACGGCAAGGG CTTCGCGGTG
GTGGCCGCCG AGGTGCGCAA GCTGGCCGAG CGCAGCCAGG AGGCCGCCGC CGAGATCGGC
GAGCTGGCCG CCAACAGCGT CTCGACCGCC GAGCGCGCCG GCAAGCTGCT CGACGAGATC
GTGCCGTCGA TCCGCAAGAC CTCCGACCTG GTGCAGGAGA TCTCGGCGGC GAGCGAGGAG
CAGAGCTCGT CGGTCACGCA GATCGGCAGC GCGATGGGCC AGCTCAGCAA GGCGACGCAG
CAGAACGCCT CGGCGTCCGA GGAACTGGCG TCCACCAGCG AGGAGCTGTC CGGCCAGGCC
GAGCAGCTGC AGCAGGTGAT CGGCTTCTTC AATGCCGGCG AGCCGCAGCC GCCGGCGGCG
CGACCCGAGC GCCGTGCCGC CAATCAGCCC GACCGGGCCG TGCGACCCAG GGCCGTGGCC
ACGCAGAAGG CGCCGTCGGT GGCTGCACCG CGGGCCCGGG AAGTCAATTT CCGCCCGTAT
TGA
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| Protein sequence | MNQHQPSWIA RLLIGAELRQ AAAEAQKNEQ ARADAESALA QVKARLAEVE SELKVRTDIM
NVTSIVSESD KKGDILSINA KFCEVSKYSR DELIGRPHNT TRHPDMPKET FKQLWQTIGR
GDTFRGIIKN RAKDGTPYYV DAVVAPILGE NGKPMKYLGV RYDITEAEIE RQNARGILGA
IDVSYAYIEF DLRGQVLQAN ANFLQLMGYR LDEVVGHHHR MFVDPAHAAT PAYDNFWRDL
NAGKPQSEVF KRITKAGREV WIQAIYAPVN DEMGRVVKIV KIATDVTREV SANNMLRQAV
EQAQAVTAAA RDGDLTQRIP LEGKSGPIEA LCSGVNSLME TTSVISADVG RVLAALAAGD
LSQRITRDYA GTFGRLKADA NATSEALSGI IEDVGRVFSG LAGGDLSQRI DRDAQGIFDQ
VKQDANSTGD KLASIIDEVR GAADQLTSAA SQVSATAQSL SQAASEQAAS VEETTASIEQ
MSASISQNSD NAKVTDGMAT KASKEAGEGG EAVTQTVRAM KQIAAKISIV NDIAYQTNLL
ALNAAIEAAR AGEHGKGFAV VAAEVRKLAE RSQEAAAEIG ELAANSVSTA ERAGKLLDEI
VPSIRKTSDL VQEISAASEE QSSSVTQIGS AMGQLSKATQ QNASASEELA STSEELSGQA
EQLQQVIGFF NAGEPQPPAA RPERRAANQP DRAVRPRAVA TQKAPSVAAP RAREVNFRPY
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