| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3799 |
|---|
| Symbol | |
|---|
| ID | 6160787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Leptothrix cholodnii SP-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010524 |
|---|
| Strand | + |
|---|
| Start bp | 4263808 |
|---|
| End bp | 4266126 |
|---|
| Gene Length | 2319 bp |
|---|
| Protein Length | 772 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641666572 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001792818 |
|---|
| Protein GI | 171060469 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGA ATCTGAAAAT CGGCCTGCGC CTCGGCACAG GCTTCGCGGT GGCGCTGCTG
CTGCTGATCA CGGTGGCCGG CATCGGCCTG AGCCGCGTCG GCGACCTGCA GACCGACATC
GCCGGCCTGG TGCAGGACAA GAACGTCAAG GCGCGGCTCG CCAACGACGT GATCAACCAG
ATCAACCAGG TCGCGCGCTC GCACCGCAAC ATGCTGATCC TCAAGAGCGA CGAGGCCACG
CGCATCGAGC TGGACAAGAT CGTCGCGGCA CGCAAGAACG TCAGCACCAA CTTCGAGTCG
CTCGACAAGT TCAGCTACGG CGACAAGGGC AAGCTGGCCT ACGACGCCAC CAAGACGACG
CGCAAGCCCT TCGTCGACGC ATCGCTGAAG CTCGAGGAGC TGATCAAGAC CCGCCAGTGG
GACGAGTCCG TCAGGTACTT CAACGCCGAC TACCGGCCGG TCTTCACCAC CTATGTCGTC
GCGGTGACGG CCTTCATCGA CTACCAGACC GAGCTGTCCG AGCAGGTCGG TGCCGACGCC
GAGGCGCTCG CCGCGTCGAC GCGCACGCTG CTGATCGTGC TGGCCGGCGC GGGCGTGCTG
ATCGGCATCA CCATGGCCTT CCTGATCACC CGCTCGATCA CCGGCCCGGT CAACCAGGTG
GTCGATGCGG CTCGCAAGAT GGCCAAGGGC AACTTCGACT TCGACCTCAA GTCCGACGCC
AAGGACGAGG TCGGCGAGGT GGTGCGTGCG GTCGAATCGG TGCAGAGCGC GATCCACCGG
ATGGTGATCG ACGCCGGCGT GCTGAGCAAG GCGGCGGTGG AGGGCAAGCT CGCCACCCGC
GCCGACGCCA GCCGGCACGA AGGCGACTAC CAGCGCGTGG TCAAGGGCGT CAACGACACG
CTCGACGCCG TGATCGGCCC GCTCAACGTG GCCGCCGACT ATGTCGAGAA GATCTCGCTG
GGCAACGCCC CGGCGCCGAT CACCGACACC TACCACGGCG ACTTCAACAC CATCAAGAAC
AACCTCAACG CCTGCATCGA CGCGACCAAC CAGCAGGCCG CGGCCGCCAA GGCGATCTCG
TTGGGCGACC TGACGGCCGT CGTCAAGGTC CGCTCGGAAG GCGACGTGAT GGCCAGGAGC
CTGATCGACG TCATCAAGGC CATCAACGCG CTGGTGGCCG ATGCCAACAC GCTGTCGACC
GCCACGGTGG AAGGCCGGCT CGACGTGCGG GTCGATGCCG CCCGGCAGCA GGGCGACTAC
CGCAAGGTGC TCGAAGGCCT GAACGCGGTG ATGGTGGCGG TCAACACGCC GGTGCAGGAG
CTGCGCGAGG TGCTCGGCGG CATGCAGGAA GGCGAGCTGA CGGTGGCCAT GAAGAAGAGC
TACGACGGCA CCTGGGACGA GCTCAAGACC GCCGTCAACA GCACGATCCG GAAGCTGTCG
CAGGTAGTGG CCGACGTCAA CTCGGGTGCG CAGGCGCTGG CCAGCGCCTC CGAACAGGTC
AGCGCCACGG CGCAGTCGCT GTCGCAGGCG GCCAGCGAGC AGGCCGCGGG CGTCGAGGAG
ACCAGCGCCT CGATCGAGCA GATGACCAGC TCGATCGCGC AGAACACCGA AAACGCCAAG
GTCACCGAAG GCATGGCCGG CAAGGCGGCG CAGGACGCGG CCGACGGCGG CGCCTCGGTC
GACGCCACCG TGGCGGCGAT GAAGCAGATC GCCAAGAAGA TCGGAATCAT CGACGACATC
GCGGCGCAGA CCAACCTGCT GGCGCTCAAT GCGGCGATCG AGGCCGCGCG CGCCGGCGAA
CACGGCAAGG GCTTCGCGGT GGTGGCCGCC GAGGTGCGCA AGCTGGCCGA ACGCAGCCAG
GTGGCGGCCC AGGAGATCGG CGAGGTGGCG ACCAGCAGCG TCGACCTGGC CGAGAAGGCC
GGCAAGCTGC TCGAGCAGAT GGTGCCGACG ATCCGCAAGA CCTCCGACCT GGTGCAGGAG
ATCGCGGCGG CGTCGACCGA ACAGGCCTCG GGTGTCGGCC AGATCAACTC GGCGGTCAGC
CAGCTCAACC AGACCACGCA GCAGAACGCG TCGAGCTCGG AAGAACTCGC CGCCACCGCC
GAGGAGATGA GCGGCCAGGC CGAACAGCTG CAGCAGACCA TGGCCTTCTT CAAGCTCGAA
TCCGGCACAC CGAACCGCAG CGCCTTCGCC GGCGTGCGCA AGCCGGCCGC AGCGGACAAG
CCCGCTGGCG GCAAGAACGG CATGCTCAAG CTGGCCGGCA ACAGGGTGAT GGCACCGGCC
GGCGCGGCGA TCGACGAATC GCAGTTCATC AAGTTCTGA
|
|---|
| Protein sequence | MFKNLKIGLR LGTGFAVALL LLITVAGIGL SRVGDLQTDI AGLVQDKNVK ARLANDVINQ
INQVARSHRN MLILKSDEAT RIELDKIVAA RKNVSTNFES LDKFSYGDKG KLAYDATKTT
RKPFVDASLK LEELIKTRQW DESVRYFNAD YRPVFTTYVV AVTAFIDYQT ELSEQVGADA
EALAASTRTL LIVLAGAGVL IGITMAFLIT RSITGPVNQV VDAARKMAKG NFDFDLKSDA
KDEVGEVVRA VESVQSAIHR MVIDAGVLSK AAVEGKLATR ADASRHEGDY QRVVKGVNDT
LDAVIGPLNV AADYVEKISL GNAPAPITDT YHGDFNTIKN NLNACIDATN QQAAAAKAIS
LGDLTAVVKV RSEGDVMARS LIDVIKAINA LVADANTLST ATVEGRLDVR VDAARQQGDY
RKVLEGLNAV MVAVNTPVQE LREVLGGMQE GELTVAMKKS YDGTWDELKT AVNSTIRKLS
QVVADVNSGA QALASASEQV SATAQSLSQA ASEQAAGVEE TSASIEQMTS SIAQNTENAK
VTEGMAGKAA QDAADGGASV DATVAAMKQI AKKIGIIDDI AAQTNLLALN AAIEAARAGE
HGKGFAVVAA EVRKLAERSQ VAAQEIGEVA TSSVDLAEKA GKLLEQMVPT IRKTSDLVQE
IAAASTEQAS GVGQINSAVS QLNQTTQQNA SSSEELAATA EEMSGQAEQL QQTMAFFKLE
SGTPNRSAFA GVRKPAAADK PAGGKNGMLK LAGNRVMAPA GAAIDESQFI KF
|
|---|
| |