Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_3112 |
Symbol | |
ID | 3965512 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3975225 |
End bp | 3978314 |
Gene Length | 3090 bp |
Protein Length | 1029 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637922209 |
Product | putative methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_528581 |
Protein GI | 90022754 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTACAAC CTGTTGTTTT ACTTAAATAC ATTTACGCTG ATACAACTAA GAGATGGTAT ATGCTTTTTC TGAAAAACCT CCCCCTTGTT AAAAAATTGG TTTTAGTCTT TTTATTGGTT GGCTTAATAC CCATGGCGCT CACTGTTCTT CTGGCGATTA ACTCATCCAA GCAAACAATA ACCGATCTCG TATCAAATCA GCTAAGCGCG GTAAGGCAAA ATAAAGAGGA GAGCATCCAA CGCTACTTTC AACGCGTTAG AAAGCAAGCC AGCACATTGG CCGCCGACCC CATTGTGGTG GATGTTGCAA CCAAACTGCC AATGGCCTTT AAAAGCTTTC GAGCAGATGC CAGCATAAAT GAAGCGCTGC TCACTCAACA AAAAGCCGCT GTGGTGGACT ATTACAACTC GCAGTTTGCT AAGCAATACC AGAAAGTTAA CAATAGCCAA GTTAATTTAG CTGCCATGTA CAACAGCCTT GACGACGATT CTTGGGCGCT ACAATATGCT TACATAGCCA GCAACCCCAA CCCACTAGGT AGCAAACATT TACTCATCAA CCGCAATGAC GGCACCCGCT ACTCAGCGTT ACACCATCAA GTGCACCCTC TGCTTAAGCA TTACTTAGAA ACATTCGGTT ATTACGATAT TTTTATCGCC GACCCCGTAA GTGGCGACAT AATATATTCC GTTTTCAAGG AGCTAGACTT CACCACCTCA ATGCTCGACG GCCCCTATCG AGAAACTAGC ATAGGGGAAG CATTTAATAA TTCACTGAAT AAACAACCAG AAACAACTTA CCTAGCAGAT TTTAAAACCT ACTTACCATC CTACGATTCG CCAGCCAGTT TTATCTCTAC ACCAATCTAT AGTGATGGCC AATTAGTGGG CATACTCATT TTTCAAATGC CCATTGAAGA TATTAATGAC ATTATGAGCT CGCGTACTGG AATGGGCCAA ACAGGGGAAA CCTATCTCGT TGGCTCAGAC AAACTTATGC GCTCCGACTC TTTCTTAGAC CCCGTTCACC ACACAGTAGT TAACTCTTTT AAACACCCTC AACAAGGCAG TGTAAATACA CGTTCGGTAA CGCAAGCTTT GCAGGGAAAA AGCAAAACAG ATTTTATTGT TGATTACAAT GGCAACCCCG TAATCTCATC CTACAATGCT ATCGATTTAA GTGAATTTAA ATGGATAGCA ATTGCCGAGC AAGATGTCGC AGAAGCGATG GCACCTCTAA ATCGGCTCCA ACGCAATATA TTACTCGTGG GTTTATTTAT AACGTGCGTT GTAGTTTTTG CGGGTTTTGC CATTAGCAAA GGTATTGCTC GCCCCATTAA CGACATGGCT GCAGTTATTA AACGCGTGCA GCAAAGCGGC GATTTTAGCC TGCGCAGTAA CTACCGCAGC AAAGATGAAA CTGGCCAAAT GGCGATAGCG TTCGACGGGT TGCTAAATAC CTTGTCTACT ATGTTTTCCG ATACTAACCA AATACTTAAA AACGTTGCCA ACGGAAACTT CGACGAAGCG ATTAAGCAAC GCTATAACGG CGACATGGGT ATATTAAGCC TGCGCGTTAA CAATACCATT CAGCAAATTA AGCAAGCCAA CTTAGAGCAA AAAAAGCAAC AAGCCCGCGC CGAACAAGCG TCCAAAAACG CAGAGCAAGC TGCGCACGAT GCTCAAGCGG CAGCAGATCG AGCAAACAAT ATAAAACAAG CTTTGGATGT AACAAGCACA TCGGTAATGA TGGCTGATAA ATCCAACACC ATTGTGTACA CCAATACAGC ATTAGATCAA ATGATGCTTG CTAGTGAGGC AGATATTCGT GCAGTGCTAC CTAACTTTAA TGCCGATACC TTAGTTGGCA AAAATATGGA TACATTTCAC CGCAACCCAG CCCATCAACA AAGTGTTATT AGCCAGTTAA AAAGTACTTA CTCCACTCAA ATTAAAGTGG GTACCCGCAC TTTTAGCCTT ATAGCCAACC CCATAACTAA AGATGGCGAG CGTGTAGGTA CAGTGGTGGA ATGGAAAGAT AGAACAGAAG AGGTGACCGT AGAAAACGAG ATTGCCCACT TAGTTAACGC GGCGTCGAAC GGTGACTTTA GCACGAAGAT AGCTTTGGAT GGCAAACAGG GCTTTTTCTT GGTGCTGGCG CAAAACCTAA ATGAAATGGT CACCACCACC CACAGTGCTT TACGCGATAT AAGCGATGCA GTAGAAAACT TGGCTCACGG CGACTTAACT CGTCGCTTAG AAAGCGATCA CAAAGGCATG TTTGCCCAGC TTCAAAATAA TTTAAACAGT TCTATGGATA AATTGGTAAC CATTATTGGC GAGATAACTG AGGGAGCAGT GTCTATTCGC AACGGGTCTA GCGAAATAGA GGCAGGTATT ATTGATTTAA GCTCTCGCAC CGAAGAGCAA GCCGCGTCGC TTGAAGAAAC TGCAAGCAGC ATGAATCAAA TGACCTCGAC TATTAAACAC AGCGAACAAA ATGCAGCCCT CGCAAATAAC CTTTCTGCTG AAGCGCAGGC AAAAGCCAGC GAGGGCGGGC TAGTAGTGAA GAAAGCCGTG GAGGCAATGG AGTCGATTAG CAGTGCCAGT AGCCGCATAT CCGATATTAT TGGCGTTATC GATGAGATTG CTTTTCAAAC AAACCTACTA GCTATTAACG CCGCCGTAGA AGCAGCACGT GCTGGTGAGC AGGGCCGTGG CTTTGCCGTA GTGGCAACCG AAGTTCGCCA GCTTGCGCAA CGATCTTCTA ATGCGGCCAA AGAAATAAAA ACGCTTATTA ACGATAGCGC CGCACGTGTG GAGCAAGGCT CTGCCCTAGT TAACCAATCT GGTGCGACCC TGCGAGATAT TGTTGAGTCG GTAAATAAAG TAAATGAAAC CATAATGGGT ATTGCAAGCG CCGCGCGCGA GCAAAGTGAA GGTATTAATC AAGTTAATAT TGCCATCAAC CAAATGGATG AAATGACCCA ACAAAATTCT GCACTCGTAG AACAAGCAAA CGCTGCCAGC CAAAATATGG CCGCGCAATC GCGCACAATG GCAGAGGCTG TAACTTTCTT TAAACTATGA
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Protein sequence | MLQPVVLLKY IYADTTKRWY MLFLKNLPLV KKLVLVFLLV GLIPMALTVL LAINSSKQTI TDLVSNQLSA VRQNKEESIQ RYFQRVRKQA STLAADPIVV DVATKLPMAF KSFRADASIN EALLTQQKAA VVDYYNSQFA KQYQKVNNSQ VNLAAMYNSL DDDSWALQYA YIASNPNPLG SKHLLINRND GTRYSALHHQ VHPLLKHYLE TFGYYDIFIA DPVSGDIIYS VFKELDFTTS MLDGPYRETS IGEAFNNSLN KQPETTYLAD FKTYLPSYDS PASFISTPIY SDGQLVGILI FQMPIEDIND IMSSRTGMGQ TGETYLVGSD KLMRSDSFLD PVHHTVVNSF KHPQQGSVNT RSVTQALQGK SKTDFIVDYN GNPVISSYNA IDLSEFKWIA IAEQDVAEAM APLNRLQRNI LLVGLFITCV VVFAGFAISK GIARPINDMA AVIKRVQQSG DFSLRSNYRS KDETGQMAIA FDGLLNTLST MFSDTNQILK NVANGNFDEA IKQRYNGDMG ILSLRVNNTI QQIKQANLEQ KKQQARAEQA SKNAEQAAHD AQAAADRANN IKQALDVTST SVMMADKSNT IVYTNTALDQ MMLASEADIR AVLPNFNADT LVGKNMDTFH RNPAHQQSVI SQLKSTYSTQ IKVGTRTFSL IANPITKDGE RVGTVVEWKD RTEEVTVENE IAHLVNAASN GDFSTKIALD GKQGFFLVLA QNLNEMVTTT HSALRDISDA VENLAHGDLT RRLESDHKGM FAQLQNNLNS SMDKLVTIIG EITEGAVSIR NGSSEIEAGI IDLSSRTEEQ AASLEETASS MNQMTSTIKH SEQNAALANN LSAEAQAKAS EGGLVVKKAV EAMESISSAS SRISDIIGVI DEIAFQTNLL AINAAVEAAR AGEQGRGFAV VATEVRQLAQ RSSNAAKEIK TLINDSAARV EQGSALVNQS GATLRDIVES VNKVNETIMG IASAAREQSE GINQVNIAIN QMDEMTQQNS ALVEQANAAS QNMAAQSRTM AEAVTFFKL
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