Gene Rpic_0536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_0536 
Symbol 
ID6287044 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010682 
Strand
Start bp572030 
End bp573859 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content64% 
IMG OID642624101 
Productmethyl-accepting chemotaxis sensory transducer with Cache sensor 
Protein accessionYP_001898123 
Protein GI187927636 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGTCG TAGTAGGAAA CCATACCGTG CTTGCATCCA TCCGTACTCG CATTTTGCTG 
ACCTGCGTTG CCATCGTGGT CGGCGCATTG ACCTTTGCCG GCGGTCTCAA CTATCTCGTG
ACGCGCTCGT ACAACGACGA GTCCATCCGC CAGAACCTGC AGTCCGTCGC GCGGGGCCAC
ATCGCTGGCA TCGACGACTG GGTGGCGTCC AAGACGCAGA TGATGGTGTC GCTGCAAGAC
GTGGCGGTGT CTGCCGATCC GATTCCGGTC TTCAAGGCCG TGCACAAGGC TGGCGGCTTC
ATTAACGTCT ATGTTGGCTA TCCCGACAAG TCGTACAAAT TCTCGAACCC CGAAGGCATT
CCGCCGACGT ATGACCCGAC CGCGCGCCCC TGGTACAAGC AGGCGGTGGA GGCGGGCAAG
CCTGTGGTGA CGCCGCCGTA CGTGAGCGCC AGCACCGGCC AGCTCGTGGT GACTTTCGCA
GTGCCCATTC TGGAAGGCGG CGCGCTCAAG GGCGTGATTG GCGGCGACGT GGCAATGGAC
AGCGTGATCG CCAACGTGAA GGCCATCCAT CCGACGCAGG CGAGCTTCGG TTTCCTCGTC
AACGCTGCGG GCAAGATCGT TGCGCACCCG AATGACAAAC TCACGCTCAA ACCGGCAACT
GAGCTGGCGG CAGGGTTGAA CGAAGCCACA CTGGCATCGC TGGCACAAGC CGAGAGGCCC
GTGGAAGTGA CGGTGGATGG GGCGTCCAAG CTGCTCTACC GCCAGGGCGT GAAGGGCACC
GACTGGGGCC TGGTGGTGGC GCTGGACAAG TCTGACGCCA CCGCGGGTAT GCGCTCGCTG
GTGATGACGT CGATTGGCGC GCTGGTGGGC GTGGCCATCG TTGCAGCACT CATCGTCGGT
GCAATGACGG CACGCGCGTT CCGCCGCCTG TCGATGATCC GTGATGCAAT GGACGACATC
GGCTCGGGCA GCGGCGACCT CACCAAGCGT CTGCCGTCGG ACGGCGAAGA CGAAGTCGCG
CAGATCGCCC GTTCGTTCAA TGCGTTTGCC GACAAGCTCA CGGCGGTGAT GCAGCAGATC
CGCCTGGGCA GCGATTCGGT GCGCTCGGCC GCGCAGGAAA TTGCCGCCGG CAACGCAGAC
CTGTCGCAGC GCACGGAAGA GCAGGCCAGC TCGCTGGAAG AAACCGCGTC GAGCATGGAA
GAACTGACGA GTATCGTGAA GCAGAACGCC GACAACGCGC GTCAGGCCAG CCAGCTTGCC
GTCACGGCGT CGGACGTGGC CACGCGCGGC GGCAACGTGG TCGGCCAGGT TGTGCAGACC
ATGGGCGGCA TCAACGAGAG CAGCAAGAAG ATTGCCGACA TCATCGGCGT GATCGAAAGC
ATCGCCTTCC AGACCAACAT CCTGGCGCTG AACGCGGCGG TGGAAGCCGC GCGTGCCGGC
GAGCAGGGCC GCGGCTTTGC CGTGGTGGCC AGCGAAGTGC GCAGCCTGGC GCAGCGTTCG
GCCGGTGCGG CCAAGGAAAT CAAGGCGCTG ATCAGCGACT CGGTGGATCG TGTGAGCAAC
GGCACGGCGC TGGTGGATCA GGCCGGCGTG ACGATGGCCG AGATCGTGGA TGCAGTGAAG
CGCGTGACCG ACATCATGGG CGAGATTTCA TCAGCGTCGG AAGAGCAGAG CAGCGGCATC
GAGCAGGTCA ACCAGGCCGT CAACCAGATG GACCAGGTGA CGCAGCAGAA CGCCGCGCTG
GTCGAGCAGG CGGCTGCCGC TGCGGAATCG CTGGAGGAAC AGGCCCACAA CCTGAACGAG
GCAGTGGGGC AGTTCCGCTT GTCGCACTAA
 
Protein sequence
MGVVVGNHTV LASIRTRILL TCVAIVVGAL TFAGGLNYLV TRSYNDESIR QNLQSVARGH 
IAGIDDWVAS KTQMMVSLQD VAVSADPIPV FKAVHKAGGF INVYVGYPDK SYKFSNPEGI
PPTYDPTARP WYKQAVEAGK PVVTPPYVSA STGQLVVTFA VPILEGGALK GVIGGDVAMD
SVIANVKAIH PTQASFGFLV NAAGKIVAHP NDKLTLKPAT ELAAGLNEAT LASLAQAERP
VEVTVDGASK LLYRQGVKGT DWGLVVALDK SDATAGMRSL VMTSIGALVG VAIVAALIVG
AMTARAFRRL SMIRDAMDDI GSGSGDLTKR LPSDGEDEVA QIARSFNAFA DKLTAVMQQI
RLGSDSVRSA AQEIAAGNAD LSQRTEEQAS SLEETASSME ELTSIVKQNA DNARQASQLA
VTASDVATRG GNVVGQVVQT MGGINESSKK IADIIGVIES IAFQTNILAL NAAVEAARAG
EQGRGFAVVA SEVRSLAQRS AGAAKEIKAL ISDSVDRVSN GTALVDQAGV TMAEIVDAVK
RVTDIMGEIS SASEEQSSGI EQVNQAVNQM DQVTQQNAAL VEQAAAAAES LEEQAHNLNE
AVGQFRLSH