Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp0507 |
Symbol | cheD1 |
ID | 1222814 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 628630 |
End bp | 630432 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637240367 |
Product | methyl-accepting chemotaxis I |
Protein accession | NP_522068 |
Protein GI | 17548728 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGAACC GACTTTCCAT CCGCTTCCGA CTCAACGCCG CCCTTGTGCT GCTTGGCGCA CTGCTCGCCA TCATCGGCAC CATCGGCGTG ATCGGCATGC GCGCCTCCGA CGCGAACATC CGCGAGATCT ACAGCAATCA GCTCGCCTCG ACCTCGCTGG TCTCCAAGGC CCAGCTGAAC GCCGCCGTGA TCCGGACCAC GCTGGACCGC GCGGTGTTCC ATATCGATGC TGCCGATGTG CCGGCCGTCA TCGACAAGGC CGCCGCGTAC CGCGCCAAGT CCGAGGACGC CTGGAAACAG TACAAGGGCC TGCCGATGAG CGCCGACGAG GCCCGCCTGG CCGCCGACGT CGACGCCAAG CGCACCACCC TGTTCCGCGA CGGCATCGAG CCGCTGGTCA CCGCGCTGCG TGCTCGCGAT GCCGCCGCCG TCGACAAGGC GGTGATGACC GTGATTCCGC CGATGTTCGT CGCGCTGTCG GCCGCCGTGG ATGCGCTGGA CCGCAACCAG GCCGAACAGG CCAAGGCTGC CTACGAGGGG GCTGTGACGC GTTCGCAGAA CTTCCTGTGG CTGATCATCG GTGCCATCGT GGTGGGGATT CTCTCGGCGG TGGCCTGTGC GTTCGGCCTG GACCGGGCGA TCTCGGTGCC GCTGAGCCGC ATGCTCGGCA GTTTCGGTGA GATCTCGCGT GGCAACCTCA CCGAGCAGAT CGTCGTCACC AGCCAGGACG AGATGGGCGC GCTCACGCGC GGCTTGCAGG ACATGCAGCG CGGGCTGATC CGGACCATCG AGACGATGCG CGGCGGCAGC GATTCGATCG CCAGCGCCAC CAAGCAGATC GCGGCCGGCA ACATGGATCT GTCGCAGCGC ACGGAAGAGC AGGCCAGCTC GCTGGAAGAA ACGGCCTCCA GCATGGAAGA GCTGACCTCG ATCGTGAAGC AGAACGCGGA CAACGCGCGC CAGGCGAGCA CGCTGGCGGT CAACGCTTCG GACATCGCGG TCAAGGGCGG CGAGGTGGTG GGCCGCGTGG TCGAGACCAT GGCCGGCATC AACGACAGCA GCAAGAAGAT CGCTGACATC ATCGGCGTGA TCGAGGGCAT TGCATTCCAG ACCAACATCC TGGCGCTGAA CGCGGCGGTG GAAGCGGCCC GGGCCGGTGA GCAGGGGCGT GGCTTCGCGG TGGTGGCGGG CGAGGTGCGC AGCCTGGCGC AGCGCTCGGC GGGGGCGGCC AAGGAGATCA AGGAGCTGAT CTCGGACTCG GTCGGCCGGG TCGAGAACGG CACCACGCTG GTGGCCGAGG CCGGCACGGT GATCGACGAA GTGGTGGTGG CGGTCAAGCG CGTGACGGAC ATCATGGGCG AGATCAGCGC GGCGTCGGAC GAGCAGAGCT CGGGCATCGA GCAGGTCAAC CAGGCCGTGA ACCAGATGGA TGAGGTGACG CAGCAGAACG CGGCACTGGT GGAAGAGGCC GCGGCGGCCG CGCAATCGCT GGAAGAGCAG GCGCGCCTGC TGCGCGAGAC GGTGGCCTCG TTCCGCCTGC CGCAAGGCGG CGGCGAGGTG CGTGCCGCCG CGCCGGCCGT GCGTGCCGTG GCGGCGGCCA AGCCTGCCGC AGCGGCGACC GTCGCCAGGC CGGCGGTCCG CAAGCCGGCT GCAACGGTGC GTGCGCGTGC GCCGCGCAAA CCCGCTGCCG AGGCACCGGT TGCCAAGGCG GCATCATCGC CGGCGCCGGC GCCGGCGGAA CCGGCCGGCG GCAAGCTGGC CCTGTCGGCG GCGGTCGATC AGGATGACTG GACCCAGTTC TGA
|
Protein sequence | MLNRLSIRFR LNAALVLLGA LLAIIGTIGV IGMRASDANI REIYSNQLAS TSLVSKAQLN AAVIRTTLDR AVFHIDAADV PAVIDKAAAY RAKSEDAWKQ YKGLPMSADE ARLAADVDAK RTTLFRDGIE PLVTALRARD AAAVDKAVMT VIPPMFVALS AAVDALDRNQ AEQAKAAYEG AVTRSQNFLW LIIGAIVVGI LSAVACAFGL DRAISVPLSR MLGSFGEISR GNLTEQIVVT SQDEMGALTR GLQDMQRGLI RTIETMRGGS DSIASATKQI AAGNMDLSQR TEEQASSLEE TASSMEELTS IVKQNADNAR QASTLAVNAS DIAVKGGEVV GRVVETMAGI NDSSKKIADI IGVIEGIAFQ TNILALNAAV EAARAGEQGR GFAVVAGEVR SLAQRSAGAA KEIKELISDS VGRVENGTTL VAEAGTVIDE VVVAVKRVTD IMGEISAASD EQSSGIEQVN QAVNQMDEVT QQNAALVEEA AAAAQSLEEQ ARLLRETVAS FRLPQGGGEV RAAAPAVRAV AAAKPAAAAT VARPAVRKPA ATVRARAPRK PAAEAPVAKA ASSPAPAPAE PAGGKLALSA AVDQDDWTQF
|
| |