| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2325 |
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| Symbol | |
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| ID | 5611169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2821094 |
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| End bp | 2823088 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933236 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001474062 |
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| Protein GI | 157375462 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.100516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00420774 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGCTTC GATGGATCGG AAATTTAAGC ATAAAAAACA AACTTATGCT CGTCATACTC
CCTCCGATAA TAGGTTGTAT TCTATTTGGT ACTTCTGTTG TATATAACCA GTATCAACTG
GGACACGGGC TCGAGCAGGT AAAAGTGCTG AGTCAACTGG CGACCGTGAA TAGTGATCTC
GTTCATGAGT TACAAAAAGA GCGGGGAATG AGTGCCGGCT TTCTAGGGTC CAAAGGCAAA
TCGTTTGCCG GTAAACTTCC GGGTCAGAGA CAATTAACCG ATAAACAATT ATCAGGGTTT
AATACATTCG TCCGTGATAA TACCTTACCT GCGGTATTCT CGACTCAGCT GAGCCGCGTT
AATTCCGAAG TTTCCAGACT GAACAATATC CGCTCCGGTG TCGATAGTCT GTCGATATCG
GTAGCCGAAG AGGTCGGTTA CTACACCCAG CTTAATAAGA TGTTATTGAG TATTGTCGAT
CAAACGGCCA AAGAGGGGGA TAGCCAGGAA ATTGCAATTC AGGCTGCTTC ATTCAGTGCC
TATCTTCAGA TGAAGGAGAG AGCGGGAATA GAACGTGCGG TGTTAAGTTC CACATTCGGA
AATCCTGAGT TTAAGTCAGG CATGTTTATT AAGTTTGTCA CTCTGGTATC GGAGCAAGCC
AGTTACGAAG AGCGCTTTCT TGCCTTGGCG TCTGAAGAGG TTAAAAGCCG GTACAGACAA
CTGACCAGTT CTCAAGCCGT AGCCGATGTT CAGGCACTCA GACAGATTGC ATTAAGACAA
AAGGGTGAGG TTATCAGTGC TCAAAGCGCC GAGAGTTGGT TTGCTAAATC CACAGCCCGA
ATCGAATTGG TGCGTGCATT CGAAAAATCG CTATCTGAGT CCCTGATTAG CGTGACAGAA
AAACAGCTGA AAGCCTCCCA ATCTGTGATG TTGAGTATCA TAGTCATATT GATTATTTCA
GGTGCGCTGG TCATCTTTAT CTCGGTTACT GTCGCAAAAT ATATGCACAA TCGTCTGCAT
TACCTGCACT CAACTATCAG TACCGCACAG CAAAATTACG ATCTTAGTGT TCGTGTTAAA
AGTGAGACAA ATGACGAGCT TGGTGAATTA GGTAGGGCTT TCAATAATAT GATGAATGAT
TTTGAGCAAG TCATTCATAA GGTCAGGGAT AATACCGACA GGCTATTGCA TGCGTCTGAG
AAGATGGATA CCTGTGCAAC GGCTATGCAA CAAGACGTTG CTATCGGGCA TAGCGAGGCC
GAGCAAGTCG CCTCGGCGAT GACGGAGATG AGTGCGACGG TGCAAGAGAT CGCAATCAAT
GCGGTGAAGG CCTCTGAGGC GTCCACAGCG GCCAATGTCG AAGCGAAAGA GGGAAATATT
GAGGTCAGCA AAACCTGCGA CAGTATTAAC TTATTGGCAC AGGAGATAGG CGAGGCATCT
ACCGCTATTC ATGAATTGGA TAATGATATT CAAGGAATTG TGAGTGTCTT AGGGGTGATC
AGTGGCATCG CAGAACAGAC GAACCTGTTG GCCTTAAATG CAGCGATCGA AGCGGCACGT
GCCGGTGAGA TGGGAAGAGG GTTTGCCGTT GTCGCCGATG AGGTGCGAAG TTTGGCTCAG
AGAGCGCAAA CCTCAACCGA AGATATCAGG GATATGACTG AACGCCTCGA AAAAGCGGCT
GTGGTTGCCG TTACAGCGAT GGATAAGGGT AAGTCCCAGG CAGAGATCAG TGTTACCGAA
TCGGAAAAAG CGGGTCAAGA TCTCGATAAG ATTGTTCATG AAGTGGGTGT GATTGACAGT
ATGAACGAAC AGATAGCTGC TGCAACACAT GAGCAGTCAG CAGTTTCCGA AGAGGTCAAT
CGTAATGCAC TTAAGATCAG TGAAACTTAT CAAAATACCC AGGTGGTCTC CGACGAGCTC
AGTCAGCTAA ATGAAACCTT ATTAGCAGAT GCCAATGCCA TGGCCGAAGA GGTGAGTAAG
TTTAAGCTAA GCTAA
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| Protein sequence | MKLRWIGNLS IKNKLMLVIL PPIIGCILFG TSVVYNQYQL GHGLEQVKVL SQLATVNSDL
VHELQKERGM SAGFLGSKGK SFAGKLPGQR QLTDKQLSGF NTFVRDNTLP AVFSTQLSRV
NSEVSRLNNI RSGVDSLSIS VAEEVGYYTQ LNKMLLSIVD QTAKEGDSQE IAIQAASFSA
YLQMKERAGI ERAVLSSTFG NPEFKSGMFI KFVTLVSEQA SYEERFLALA SEEVKSRYRQ
LTSSQAVADV QALRQIALRQ KGEVISAQSA ESWFAKSTAR IELVRAFEKS LSESLISVTE
KQLKASQSVM LSIIVILIIS GALVIFISVT VAKYMHNRLH YLHSTISTAQ QNYDLSVRVK
SETNDELGEL GRAFNNMMND FEQVIHKVRD NTDRLLHASE KMDTCATAMQ QDVAIGHSEA
EQVASAMTEM SATVQEIAIN AVKASEASTA ANVEAKEGNI EVSKTCDSIN LLAQEIGEAS
TAIHELDNDI QGIVSVLGVI SGIAEQTNLL ALNAAIEAAR AGEMGRGFAV VADEVRSLAQ
RAQTSTEDIR DMTERLEKAA VVAVTAMDKG KSQAEISVTE SEKAGQDLDK IVHEVGVIDS
MNEQIAAATH EQSAVSEEVN RNALKISETY QNTQVVSDEL SQLNETLLAD ANAMAEEVSK
FKLS
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