More than 300 homologs were found in PanDaTox collection
for query gene Ssed_2325 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008700  Sama_1713  putative methyl-accepting chemotaxis sensory transducer  55.27 
 
 
666 aa  707    Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000425798  normal  0.0665929 
 
 
-
 
NC_011663  Sbal223_2369  methyl-accepting chemotaxis sensory transducer  60.67 
 
 
664 aa  781    Shewanella baltica OS223  Bacteria  normal  0.0315396  normal  0.0961625 
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  64.8 
 
 
662 aa  868    Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_009997  Sbal195_1957  methyl-accepting chemotaxis sensory transducer  60.67 
 
 
664 aa  784    Shewanella baltica OS195  Bacteria  normal  0.257458  normal  0.211978 
 
 
-
 
NC_010506  Swoo_2282  methyl-accepting chemotaxis sensory transducer  74.7 
 
 
664 aa  1008    Shewanella woodyi ATCC 51908  Bacteria  normal  0.330304  normal 
 
 
-
 
NC_009438  Sputcn32_1813  methyl-accepting chemotaxis sensory transducer  59.91 
 
 
664 aa  776    Shewanella putrefaciens CN-32  Bacteria  normal  0.280908  n/a   
 
 
-
 
NC_009901  Spea_2242  methyl-accepting chemotaxis sensory transducer  57.89 
 
 
664 aa  748    Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1950  methyl-accepting chemotaxis sensory transducer  60.82 
 
 
664 aa  784    Shewanella baltica OS185  Bacteria  normal  0.0377955  n/a   
 
 
-
 
NC_008321  Shewmr4_1685  methyl-accepting chemotaxis sensory transducer  60.24 
 
 
664 aa  779    Shewanella sp. MR-4  Bacteria  normal  0.0832618  normal  0.158688 
 
 
-
 
NC_009831  Ssed_2325  methyl-accepting chemotaxis sensory transducer  100 
 
 
664 aa  1345    Shewanella sediminis HAW-EB3  Bacteria  normal  0.100516  hitchhiker  0.00420774 
 
 
-
 
NC_008322  Shewmr7_1760  methyl-accepting chemotaxis sensory transducer  60.24 
 
 
664 aa  780    Shewanella sp. MR-7  Bacteria  normal  0.106787  normal  0.536367 
 
 
-
 
NC_008345  Sfri_1352  methyl-accepting chemotaxis sensory transducer  52.26 
 
 
668 aa  666    Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1790  methyl-accepting chemotaxis sensory transducer  60.54 
 
 
664 aa  778    Shewanella sp. ANA-3  Bacteria  normal  0.119789  normal  0.182995 
 
 
-
 
NC_009052  Sbal_1924  methyl-accepting chemotaxis sensory transducer  60.8 
 
 
531 aa  629  1e-179  Shewanella baltica OS155  Bacteria  normal  0.666083  n/a   
 
 
-
 
NC_003910  CPS_1937  methyl-accepting chemotaxis protein  38.78 
 
 
662 aa  344  2.9999999999999997e-93  Colwellia psychrerythraea 34H  Bacteria  normal  0.0215017  n/a   
 
 
-
 
NC_003910  CPS_0763  methyl-accepting chemotaxis protein  36.59 
 
 
661 aa  303  8.000000000000001e-81  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0377  Nitrate and nitrite sensing domain protein  33.87 
 
 
661 aa  271  2.9999999999999997e-71  Sulfurospirillum deleyianum DSM 6946  Bacteria  decreased coverage  0.000413313  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  33.61 
 
 
653 aa  268  2e-70  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  33.06 
 
 
653 aa  256  1.0000000000000001e-66  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  30.35 
 
 
661 aa  254  5.000000000000001e-66  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  32.45 
 
 
605 aa  253  7e-66  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_007575  Suden_0209  methyl-accepting chemotaxis sensory transducer  30.95 
 
 
658 aa  251  4e-65  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.603066  n/a   
 
 
-
 
NC_007575  Suden_0989  methyl-accepting chemotaxis sensory transducer  32.09 
 
 
720 aa  243  1e-62  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_0983  methyl-accepting chemotaxis sensory transducer  32.15 
 
 
720 aa  239  1e-61  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  43.22 
 
 
543 aa  239  2e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  43.4 
 
 
552 aa  227  7e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  30.43 
 
 
653 aa  225  2e-57  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_012880  Dd703_2657  methyl-accepting chemotaxis sensory transducer  27.38 
 
 
646 aa  224  3e-57  Dickeya dadantii Ech703  Bacteria  normal  0.653915  n/a   
 
 
-
 
NC_008740  Maqu_3099  methyl-accepting chemotaxis sensory transducer  27.99 
 
 
672 aa  222  1.9999999999999999e-56  Marinobacter aquaeolei VT8  Bacteria  normal  0.500846  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  46.98 
 
 
637 aa  221  3e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009456  VC0395_1007  hemolysin secretion protein HylB  39.14 
 
 
548 aa  220  7.999999999999999e-56  Vibrio cholerae O395  Bacteria  normal  0.702356  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  41.46 
 
 
638 aa  219  1e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  38.33 
 
 
620 aa  216  8e-55  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  37.11 
 
 
620 aa  214  5.999999999999999e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  39.12 
 
 
716 aa  213  9e-54  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  38.15 
 
 
634 aa  213  1e-53  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  40.22 
 
 
541 aa  212  2e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_011312  VSAL_I0920  nitrate and nitrite sensing methyl-accepting chemotaxis protein  30.54 
 
 
662 aa  212  2e-53  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  39.73 
 
 
548 aa  211  2e-53  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  39.09 
 
 
541 aa  212  2e-53  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  39.38 
 
 
568 aa  211  5e-53  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  38.86 
 
 
541 aa  211  5e-53  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  41.23 
 
 
634 aa  209  9e-53  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4029  methyl-accepting chemotaxis sensory transducer  37.89 
 
 
630 aa  209  1e-52  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  38.39 
 
 
634 aa  209  1e-52  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  40 
 
 
552 aa  209  1e-52  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  41.26 
 
 
411 aa  208  2e-52  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  46.91 
 
 
572 aa  209  2e-52  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  37.29 
 
 
638 aa  207  4e-52  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  38.75 
 
 
640 aa  207  6e-52  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  39 
 
 
713 aa  207  6e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_010501  PputW619_4887  methyl-accepting chemotaxis sensory transducer  41.61 
 
 
645 aa  206  9e-52  Pseudomonas putida W619  Bacteria  normal  normal  0.658451 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  37.96 
 
 
712 aa  206  9e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  38.24 
 
 
712 aa  206  1e-51  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  37.33 
 
 
620 aa  206  1e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  37.93 
 
 
540 aa  205  2e-51  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  37.28 
 
 
619 aa  205  2e-51  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  36.87 
 
 
620 aa  205  3e-51  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  42.58 
 
 
636 aa  204  4e-51  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_010322  PputGB1_0343  methyl-accepting chemotaxis sensory transducer  40.65 
 
 
645 aa  204  5e-51  Pseudomonas putida GB-1  Bacteria  normal  0.675969  normal 
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
573 aa  204  6e-51  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_002947  PP_0320  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
645 aa  202  1.9999999999999998e-50  Pseudomonas putida KT2440  Bacteria  normal  decreased coverage  0.0000409011 
 
 
-
 
NC_009512  Pput_0342  methyl-accepting chemotaxis sensory transducer  40.32 
 
 
645 aa  202  1.9999999999999998e-50  Pseudomonas putida F1  Bacteria  normal  0.860801  normal 
 
 
-
 
NC_003910  CPS_3864  methyl-accepting chemotaxis protein  39.54 
 
 
568 aa  201  3e-50  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  43.14 
 
 
633 aa  201  3e-50  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  37.92 
 
 
541 aa  201  3.9999999999999996e-50  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  36.87 
 
 
638 aa  201  3.9999999999999996e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_012917  PC1_0413  methyl-accepting chemotaxis sensory transducer  29.48 
 
 
653 aa  201  5e-50  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  34.34 
 
 
558 aa  201  5e-50  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1251  methyl-accepting chemotaxis sensory transducer  27.86 
 
 
646 aa  201  5e-50  Dickeya zeae Ech1591  Bacteria  normal  0.457093  n/a   
 
 
-
 
NC_009439  Pmen_0734  methyl-accepting chemotaxis sensory transducer  42.54 
 
 
643 aa  200  6e-50  Pseudomonas mendocina ymp  Bacteria  normal  0.770301  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  37.96 
 
 
650 aa  200  7e-50  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  44.44 
 
 
679 aa  199  1.0000000000000001e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2783  methyl-accepting chemotaxisprotein  37.47 
 
 
690 aa  199  1.0000000000000001e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.468562 
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  38.37 
 
 
619 aa  199  2.0000000000000003e-49  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  36.56 
 
 
554 aa  198  2.0000000000000003e-49  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0450  chemotaxis sensory transducer  38.94 
 
 
645 aa  199  2.0000000000000003e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  49.78 
 
 
523 aa  199  2.0000000000000003e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  38.18 
 
 
773 aa  198  3e-49  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  41.84 
 
 
533 aa  197  3e-49  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2525  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
538 aa  198  3e-49  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0982  methyl-accepting chemotaxis sensory transducer  27.37 
 
 
663 aa  197  4.0000000000000005e-49  Marinomonas sp. MWYL1  Bacteria  normal  0.293812  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  38.07 
 
 
674 aa  197  4.0000000000000005e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008345  Sfri_0861  methyl-accepting chemotaxis sensory transducer  36.78 
 
 
542 aa  197  4.0000000000000005e-49  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  37.88 
 
 
539 aa  197  4.0000000000000005e-49  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  38.98 
 
 
628 aa  197  5.000000000000001e-49  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0796  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
620 aa  197  5.000000000000001e-49  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  38.55 
 
 
557 aa  196  1e-48  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_004347  SO_0987  methyl-accepting chemotaxis protein  35.29 
 
 
554 aa  196  1e-48  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  38.58 
 
 
545 aa  196  1e-48  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  39.74 
 
 
647 aa  196  1e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  42.32 
 
 
561 aa  195  2e-48  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_009831  Ssed_0837  methyl-accepting chemotaxis sensory transducer  35.07 
 
 
554 aa  195  2e-48  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  39.2 
 
 
638 aa  195  2e-48  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  39.81 
 
 
626 aa  196  2e-48  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1494  methyl-accepting chemotaxis sensory transducer  34.72 
 
 
548 aa  196  2e-48  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  39.68 
 
 
638 aa  195  3e-48  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1114  methyl-accepting chemotaxis sensory transducer  28.21 
 
 
700 aa  194  4e-48  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.655641 
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  40.51 
 
 
561 aa  194  4e-48  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  36.57 
 
 
564 aa  194  4e-48  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
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