Gene Sama_2880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2880 
Symbol 
ID4605127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3420502 
End bp3422178 
Gene Length1677 bp 
Protein Length558 aa 
Translation table11 
GC content55% 
IMG OID639782291 
Productputative methyl-accepting chemotaxis sensory transducer 
Protein accessionYP_928752 
Protein GI119776012 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATAT CCATGTCTAA TTACAGTCTG AGAAACAAAC TTTTGCTGCT GGCCATGGTG 
CCTTTGGTGC TGATCCTTAC TGCCGTGATG AGCTATTCCT GGCAGGTTGA GAGCCAGGCG
TTGGACGATT CGGTTGCCCT GTTTAAGGAA AAGCTGGTCA ATGAGCGGCA ACAGCAGCTC
CAGGAGGCCA CCCAGATTGC CCTTGCCGTG GTCGACCACC AGATAAGCCT GGGGCAAAAC
GGCAACATCA ATGATGCCCT GCGGCCACTG AGATTTGGCA GCGCCGGTTA CTTTTTTATC
TATGACTATC AGGGTGCCAA CGTGTTCCAC GCCACCAATC CGGCATTGGA AGGTACACCG
CAAATCGGCA TGACAGATCC CCAAGGCACC AAGATTGTGG TGGGGCTTAT TGATGCAGCC
AAACGTGGCG GCGGCTTTTT TAACTACGTG TATCCCAAAC CCGGTGTCGA GGGGTTGGTG
GATAAAATTG GGTATGCGGC TCCCATCCCC GGAAAAGATT GGCTATTGGG CACAGGCGCC
TATCTGGATG ATATAGACGC CGCGGTTGAC ACTTATTCAC AAAGTGCCCG TCAGGCCATG
TGGGAAAAAG CCGTGGCCAT TTTCATGATG TCGCTGGTGC TTGCCTTTAT CACCCTGATA
GCCATTTGGA GCGCCGCCCA CAGGATGGTG AAGCCCATTC GTGCCATGGT CGACAGCCTG
AACGACATCG CCAAGGGAGA AGGGGATCTT ACGGCGCGCC TCAGCGTTCG TGGTGAGGAT
GAAATCGCTG AGCTCGGCAT CGCCTTTAAC CAATTCGTGG ACAAGCTGCA GGGTATTATC
CGCGATGTGG CCGATACCAC GGGCCGGGTA AAACAGGCGG CCGTCGATAT TGACCGCCAA
ACTTCGGAGA TGGCGAATCA GCTTAACAGT CACAATAACG AAACCGATCA GGTGGTTACC
GCCATCACTG AGATGTCGTC CACTGCCGCC GAGGTGGCAC AAAATACCAC CCAGGTGGCC
GAAGCCACTC AGGCAGCCAC TGGTGATGTC GCCAAAGCCC AGGCCTGTGT TGATACCTCG
CTGGCAGAGA TTTCGAACCT GATGTCACAG GTTAACGACG CGGCGGCCAA TATTCAGTCC
CTCAGCGAAC AGTCGCAAAA GATTAATTCG GTGTTGTCTG TGATTGGTGG CATTGCCGAG
CAAACCAACT TGCTGGCGCT CAATGCGGCC ATTGAGGCCG CACGGGCCGG AGAACAGGGC
CGGGGCTTTG CGGTGGTGGC CGACGAAGTG CGTAATCTTG CCAGTCGGAC CCAGGCAAGT
ACTCTGGAAA TCAATGAAAT GCTTACCGAC TTGCACCGCC TGGTGTCATC TGCCGTGAAA
ACCATGGATG AGAGCCAGCA CAGTTGTCAG CGGTCTGTGG AAGCCTCGAC AGCGATTTCT
GAGAGTCTGG GATCGGTGAC CAGCGCCGTT ACCGCTATCA ATGATATGAG CACCCAGATT
GCGGCGGCGG CCACCGAGCA AAGCTCTGTG ACCGAAGAGA TTAACCGTAA TGTGTATGCC
ATTCAGGAGA TAGTGAATGC GTTGCTGGTC TCCAGTCAGG AGGCAAGAAC CGTCAGCCGC
ACCGTCTCCA CCGAAGGGGC CCAGCTCTCC AACCTGGTAG GCCAGTTCAA GGTGTGA
 
Protein sequence
MSISMSNYSL RNKLLLLAMV PLVLILTAVM SYSWQVESQA LDDSVALFKE KLVNERQQQL 
QEATQIALAV VDHQISLGQN GNINDALRPL RFGSAGYFFI YDYQGANVFH ATNPALEGTP
QIGMTDPQGT KIVVGLIDAA KRGGGFFNYV YPKPGVEGLV DKIGYAAPIP GKDWLLGTGA
YLDDIDAAVD TYSQSARQAM WEKAVAIFMM SLVLAFITLI AIWSAAHRMV KPIRAMVDSL
NDIAKGEGDL TARLSVRGED EIAELGIAFN QFVDKLQGII RDVADTTGRV KQAAVDIDRQ
TSEMANQLNS HNNETDQVVT AITEMSSTAA EVAQNTTQVA EATQAATGDV AKAQACVDTS
LAEISNLMSQ VNDAAANIQS LSEQSQKINS VLSVIGGIAE QTNLLALNAA IEAARAGEQG
RGFAVVADEV RNLASRTQAS TLEINEMLTD LHRLVSSAVK TMDESQHSCQ RSVEASTAIS
ESLGSVTSAV TAINDMSTQI AAAATEQSSV TEEINRNVYA IQEIVNALLV SSQEARTVSR
TVSTEGAQLS NLVGQFKV