Gene VSAL_I0920 details

Gene Information

• Locus tag: VSAL_I0920
• ID: 6986733
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aliivibrio salmonicida LFI1238
• Kingdom: Bacteria
• Replicon accession: NC_011312
• Strand: -
• Start bp: 1018025
• End bp: 1020013
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 643379314
• Product: nitrate and nitrite sensing methyl-accepting chemotaxis protein
• Protein accession: YP_002262417
• Protein GI: 209694489
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGTTAT CTATTCTAAA AAGTATAAAA ACTCGCTTAT TGCTCATATC ACTCTTACCA 
ACCCTAATCA TTACTCTATT TTTAACTCAG CTACTCATTC AAGAAAATCA AAAAGTTCAT 
GACGCTAATT ACTCATTAGA AGCCGTTTCT TTATTTAACT TACTGGATAA TGTCGCCCAT 
AACTTTGCCG TTGAACGAGG AATAACCGCA GGTTATCTCG CCTCCCAAGG GAAATCAGGT 
AATAGTAAGC TCATTGAACA AAGAAAAAAA TCAGACACAG CTGAACAGGC ATTACGTAAC 
TTTACTCCTA ATTTTTTAGA AAAAACGATT GTGTCATCTT TACTCTTTGA GGTAACCCAG 
CAATTAAATA ATAAAAATAG CATTCGCTCT CAAGTCGATA ACTTTTCAAT TACACACTCT 
CCATTTGTTT ATTATTCAAC GCTTAATCAA CTCTCTCTAG ACTCTATCTC TATTATTGTA 
TCAAAAATAA ATTCTCCTAT ATTACGCAGC GAAATGCAGG GGTTATCCGC ATTATTACAA 
GTCAAAGAAG AAGCAGGAAA AGTGAGAGGG GCTTTAAATG GTGCATTTGC AGGTAAGACA 
TCAAGCCTTG ATAAATATGC TGACATTAGC AGTTACCTTT CAACTGAATA TTTTTCTATT 
CGCCAAGCTA AATCGATTCT TTCTGCTGAT TTTGTTCAAC AGTTAAACAA CGCGATGTCT 
TCTAATACTT GGAAAAAAGT GACGGATACG CAGTCTATTT ATCTGTCTCA AAAAAATACA 
TTGGCAACAT TACAAGGACC AAGCGCAAAT GTTTGGTTTC CAATGGCCAC TCAACGTATT 
GGCCTCATAA AAACGATCAC CGATAATCTA TCAAAAAGTC TTAATATCGC TGCAACAAAA 
GAAATGTCAC AATCAGCATT CATTCGAAAC GGCTACATAG CGGTTGCTCT GTGCCTCATA 
TTACCTATTA TTTTCATTAG TTTTTTTACC GCGAAATCGA TCAATAGCCG AATGACTTCG 
TTTAGCCTTC GTATTAATGA AATATCTGCC AGTAAAAATT TAACACTCAC ATTGGAAAAC 
AACAATGAGA ATAAGTTCGA TGCTATCGCA AGAGATATTA ATTCATTACT TGAAAATATA 
GCACTCCCGC TACGTTCAGC GCATAACGTC GCCTCTCAAA CACAAAATGA ACTAAACTTA 
CTAAGTGAAC ACTTGAAACA AGCGACGCAA TCAAGTCAAA CAACGCTGAC TCATTGTGAC 
AGTATCGCGA CAGCTATGAC TGAAATGGCA CAAACAAGCT CTGAAATTGC AGGGGTTACC 
AACAGCGCTC ATGAAACAAC AACACAAGCA ACCGCGAACG CAACAGAATG TAAAAACCAA 
ACTCTAGCCA CAACAGAGAC GGTTAACGAA CTGCATAGCA GTATTATTAA TACTCACCAA 
CACGTTGAAC ATTTAGAAAA ACAGACACTC AATGTGTCTG AAATATTAGA TACGATTACA 
GCGGTCTCTG ACCAAACCAA TTTACTGGCC CTTAATGCGG CAATTGAAGC GGCCCGTGCC 
GGAGAACAAG GACGAGGATT TGCGGTTGTT GCGGATGAAG TAAGAAAACT CGCTCAACGT 
AGCCAAGAAG CCACTCATGA CATTCGTCAA CTACTTGATG GCATTGGGGT TAATGCAAAA 
CAATCCTTTT TATTAATGGA AGAAAGTAAG TTATTGAGTG AAACAACTCA GGACAGTGTC 
ACGGATTCCG CTCAATACAT AGAGTCACTT AGTCATTCGG TTTCTGAAAT AGATAACTTT 
AACACCAGTA TTTCAGCGGC AACATTAGAG CAATCAGAAA CAGCAAATGC GGTTAATACT 
GATATTGATG AGTTGGCCTC TCTGGCAAAC AGTACGAACG AATTAATTCA TCATCTTGAA 
CATGAAATGA AGCAACTTGA AACGAAAATG AGTGAATTAA CCACTCAAAT TAATACCATA 
ACCGTCTAA 

 

Protein sequence

MKLSILKSIK TRLLLISLLP TLIITLFLTQ LLIQENQKVH DANYSLEAVS LFNLLDNVAH 
NFAVERGITA GYLASQGKSG NSKLIEQRKK SDTAEQALRN FTPNFLEKTI VSSLLFEVTQ 
QLNNKNSIRS QVDNFSITHS PFVYYSTLNQ LSLDSISIIV SKINSPILRS EMQGLSALLQ 
VKEEAGKVRG ALNGAFAGKT SSLDKYADIS SYLSTEYFSI RQAKSILSAD FVQQLNNAMS 
SNTWKKVTDT QSIYLSQKNT LATLQGPSAN VWFPMATQRI GLIKTITDNL SKSLNIAATK 
EMSQSAFIRN GYIAVALCLI LPIIFISFFT AKSINSRMTS FSLRINEISA SKNLTLTLEN 
NNENKFDAIA RDINSLLENI ALPLRSAHNV ASQTQNELNL LSEHLKQATQ SSQTTLTHCD 
SIATAMTEMA QTSSEIAGVT NSAHETTTQA TANATECKNQ TLATTETVNE LHSSIINTHQ 
HVEHLEKQTL NVSEILDTIT AVSDQTNLLA LNAAIEAARA GEQGRGFAVV ADEVRKLAQR 
SQEATHDIRQ LLDGIGVNAK QSFLLMEESK LLSETTQDSV TDSAQYIESL SHSVSEIDNF 
NTSISAATLE QSETANAVNT DIDELASLAN STNELIHHLE HEMKQLETKM SELTTQINTI 
TV