| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_1007 |
|---|
| Symbol | hylB |
|---|
| ID | 5133982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 984345 |
|---|
| End bp | 985991 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640531329 |
|---|
| Product | hemolysin secretion protein HylB |
|---|
| Protein accession | YP_001215843 |
|---|
| Protein GI | 147671663 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.702356 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCA ATAAATTTTC CCTTAAATGG ATGTTGGCTA TTGCCGTCGC CATCCCTGCG
ATAGCACTGT TGTTTGTGGC TTTCACCAGT CTAAACACCA TGTCAGTGAT GCAAGCGCAG
TCCAACAGCT TGTATGCCAA CACGGCTGCA CCAATGCGTG CCATGGCTGA AGCAACCTCA
CGTATTCCTC GGATGCGTGT CGGTATCGAT ATGATGCTAC TGCAAGAAAC GGCGCTCAAA
GATGCGAAAG GGGTCCTCAA ACGAGTCGAA GAGGCAAGAA CCGAAGATAT CCCAGAAATG
CGTCAAGCAA TGCAAGTTGC GGTTGATTCT CAGGTTAATC CGGAACTCAA AGAGCAGGCA
CGCAAACTTC AAGCTCGTTT TGAACAAATG GTACGTGAAG AGTTAGAGCC TATGCTGCAA
GCCTTCGCCA ATAACGATAT GACCACGGCA CAAAACATTT ACCGCGATAA ATACGCGCCG
ACCTATGGTG AAATGCGTAA ACAAGCCAAC CAGATCCTCG ATACGCTTTT GCAGCAAGCG
GAGCAGCAAA ACCATGCCAG TGTGGAAAGC TTCGAAGCAG GACGCACCAA GCAAATGGTG
ATCATTGCAG CAGGCTTGAT CATTTCATTC ATCACTTCAC TGGTTATCAT AACGAACTTA
CGTAGCCGAG TGGCTTACCT GAAAGATCGT ATGAGTTCTG CGGCGGCGAA TCTTTCACTG
CGTACTCGAT TGGAGTTGGA TGGTAACGAT GAACTGTGTG ACATCGGTAA AAGCTTCAAT
GCGTTCATTG ATAAAGTGCA TCACTCGATT GAAGAAGTGG CAGAAAACTC AAAAGAGCTG
GCGACGATGG CCTCTAGTGT GTCGCAGCGC GCGCACATGA CGCAATCTAA CTGTGCTTCG
CAGCGAGATA GAACAGTGCA AGTTGCGACG GCGATTCATG AGCTTGGTGC CACCGTATCC
GAAATCGCTT CCAATGCGGC CATGGCTGCC GATGTCGCGA AGCAAGCGAC GCTGCATTCT
GGTGAAGGGA AAAAAGTGGT AGGCGAAGTG CAAAATCGGA TCCAAACACT GGTCAATGAA
CTCGATAATG CCACTCAAGT TGTCTCATCA CTGGCGACCC AAATTAACGG TATTAGCTCA
ACACTTGATA CCATTCGCAG TATTTCTGAG CAAACGAACC TATTGGCGCT CAACGCTGCG
ATTGAAGCTG CGCGAGCGGG TGAACAAGGT CGTGGTTTTG CGGTGGTGGC GGATGAAGTT
CGCACATTAG CAAGTCGTTC AGCGGCATCG ACGGAAGAGA TCCAGCAAGT CATTAATCGC
CTTCAAACGG AGTCAACTCG CGCAGTAGAA GCAATGGAAA AAGGTCGCTC GCAAAGTGAT
GTGGTGGTTG AGTTTTCCGC TAAAGCGAAC CAATCTCTCA CAGAGATCAA CAGCCAAATT
GATCAGATTA ATGATCAAAA TATTCAAGTT GCGACCGCGA CAGAGGAACA ATCAACCGTG
GTGGAAGACA TTAATCGCAA CGTTGAAGAC ATCAACCAAC TGACGACAGA AACCTCGCAT
GTTGCGGATG AGTTAAGCCG AGCCAGTGCA AGCTTGCAAC GTCTCTCTTC GCAACTGGAT
AAACTGGTGG GCAGTTTTGA ACTTTAA
|
|---|
| Protein sequence | MIINKFSLKW MLAIAVAIPA IALLFVAFTS LNTMSVMQAQ SNSLYANTAA PMRAMAEATS
RIPRMRVGID MMLLQETALK DAKGVLKRVE EARTEDIPEM RQAMQVAVDS QVNPELKEQA
RKLQARFEQM VREELEPMLQ AFANNDMTTA QNIYRDKYAP TYGEMRKQAN QILDTLLQQA
EQQNHASVES FEAGRTKQMV IIAAGLIISF ITSLVIITNL RSRVAYLKDR MSSAAANLSL
RTRLELDGND ELCDIGKSFN AFIDKVHHSI EEVAENSKEL ATMASSVSQR AHMTQSNCAS
QRDRTVQVAT AIHELGATVS EIASNAAMAA DVAKQATLHS GEGKKVVGEV QNRIQTLVNE
LDNATQVVSS LATQINGISS TLDTIRSISE QTNLLALNAA IEAARAGEQG RGFAVVADEV
RTLASRSAAS TEEIQQVINR LQTESTRAVE AMEKGRSQSD VVVEFSAKAN QSLTEINSQI
DQINDQNIQV ATATEEQSTV VEDINRNVED INQLTTETSH VADELSRASA SLQRLSSQLD
KLVGSFEL
|
|---|
| |