| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1352 |
|---|
| Symbol | |
|---|
| ID | 4277886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1608270 |
|---|
| End bp | 1610276 |
|---|
| Gene Length | 2007 bp |
|---|
| Protein Length | 668 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134127 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_750043 |
|---|
| Protein GI | 114562530 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTGGC AATGGATTAG CAACCTCAAA ATTTCGCGTA AACTGGCTTT ACTTGTAATC
CCCCCGTTAT TAACCAGTAT TCTATTTGGT GGTATGTACC TTAATAATGA ATACAACACT
CAGCATCGGT TAGCACTGAT TATTGATTTA ACCCAGGTTG CTATTATCAA TAGTTCATTA
GTACATGAAC TGCAAAAAGA GCGTGGCATG AGTGCCGGTT TTCTCAGTTC TAAAGGCCAA
GCATTTAAAG ACAATTTAAC TAACCAACGT GCTGAAACAG ACATACAAAT TCAACGTTTT
AATCTTGTTG CTCAGCAAGA GAATTTTCCT CAACAACTGC AATCCACATA TAGTGAAGTT
GCCGCTGCAT TTAATCAGCT AAGCCAAATA CGTAAAAATG TCACAGCGCT AAACATTAGC
GTCGCAGAGC AGGTTAGTTA TTATACCCGC ATCAATACCC TATTATTATC AATGGTTGAT
AATGCTGCTA GCCAGAGTTT AGACAGCCAA ATAGCCATAA AGCTCAAAGC ATTTGCGGCA
TTTTTACAAT TAAAAGAACG AGCAGGAATA GAGCGTGCTG TCCTCAGTAC CACTTTTGGC
CGCAGTGAAT CTCCCCCTGG GTCATATCGA AAATTTGTCA CGCTAGTGGC AGAGCAACAA
ACTTATGCAG AACGGTTTAT TGCCGCTGCC AGCCCAGAAA ACATCCGTAT TTTTAAACAA
GCACAACAAG ACAGTGCTAT GGCGAGTGTT GACCAACTTC GTGAAATTGC CTTTGCACAA
GACAGCGTCG CAATGGCACA ACAAAGCCCA GAAGATTGGT TTAAAATATC GACGGCACGG
ATTGAATTGC TAACTCAACT AGAAAAACAA TTCAGCCAAG ACTTGTCACA GTTAAGCCAA
GATAAATTGT CACAAGCAAC TGAGCATATG TATCTCACTG GCGCTGTGTT ATTGCTGGCT
CTTATTTTTG CTATTGTGAT GAGCATGGTT GTTTCTCGCT ACTTACATCG TAGCTTAAGT
GTGCTACACA AACAGGTGCT ACATGCAGGC ACTCAATTTG ATTTAACCAC TCGCTTAAGC
CATCAGTCAG ATGATGAATT TGGTCAAATT TCGATAGCAT TCAATCAAAT GATGGCAGAG
TTTGAACTTG TTATTACCCA AGTGCGTCGT AATGCATTGA GTTTGGTTCA TGCGGTTGAA
AAAATGAATG GTTTTACTCA CTCAATGCAA GCAGATGTTG AACAAGGTTC GTCAGAAGCT
GAGCAAGTCG CTTCTGCGAT GACTGAGATG AGTGCCACGG TCCACGAAAT TGCCGCTAAT
GCAGTGCAGG TTTCAGAAGC ATCAGCCAAT GCCAATATCG AAGTGCAGAG TGGTAACAAC
GACGTTAGTA AAACCAGTGA TGCGATTCAA TTGTTGGCTA AAGAAATTGC CAACGCTGCG
CAAAGTATTG AACGTTTAGA TAAAGATGTA CAAGATATTG TGACCATTTT AGCGGTCATC
AGCTCTATTG CTGACCAAAC TAATTTACTC GCATTAAATG CGGCAATCGA AGCAGCTAGA
GCGGGTGAGC AAGGAAGAGG TTTTGCCGTT GTTGCAGATG AAGTGCGTAC CTTAGCTCAG
CGCTCACAAC GTTCAACAGA AGACATTAAA GCGATGACCG AGCGTCTTAA AGCGGGGGCG
GCCACTGCCG TCAGTGCTAT GCAGCGAGGC CAGGTACAAG CACAACAAAG TGTTACAGAA
TCTCAACATG CAGGCAATGA GCTTAAATTG ATTGCTCAAC ACGTTGGTGT GATTGACAGC
ATGAACCAAC AAATTGCCGC TTCAACACAT GAACAATCAG CCGTGGCTGA GGAAGTGAAT
CGTAATGCGA TGAAAATCAC TGAGATCTAT CACCATACGC AGGAGATATC ACAACAGATT
GCTTTGCTAA ATGATAATTT ATTGAGTGAT GCCAGTGACA TGTCACAACA AGTCAGCAAA
TTTATCTTAT CTACTACGAC AAGCTAA
|
|---|
| Protein sequence | MNWQWISNLK ISRKLALLVI PPLLTSILFG GMYLNNEYNT QHRLALIIDL TQVAIINSSL
VHELQKERGM SAGFLSSKGQ AFKDNLTNQR AETDIQIQRF NLVAQQENFP QQLQSTYSEV
AAAFNQLSQI RKNVTALNIS VAEQVSYYTR INTLLLSMVD NAASQSLDSQ IAIKLKAFAA
FLQLKERAGI ERAVLSTTFG RSESPPGSYR KFVTLVAEQQ TYAERFIAAA SPENIRIFKQ
AQQDSAMASV DQLREIAFAQ DSVAMAQQSP EDWFKISTAR IELLTQLEKQ FSQDLSQLSQ
DKLSQATEHM YLTGAVLLLA LIFAIVMSMV VSRYLHRSLS VLHKQVLHAG TQFDLTTRLS
HQSDDEFGQI SIAFNQMMAE FELVITQVRR NALSLVHAVE KMNGFTHSMQ ADVEQGSSEA
EQVASAMTEM SATVHEIAAN AVQVSEASAN ANIEVQSGNN DVSKTSDAIQ LLAKEIANAA
QSIERLDKDV QDIVTILAVI SSIADQTNLL ALNAAIEAAR AGEQGRGFAV VADEVRTLAQ
RSQRSTEDIK AMTERLKAGA ATAVSAMQRG QVQAQQSVTE SQHAGNELKL IAQHVGVIDS
MNQQIAASTH EQSAVAEEVN RNAMKITEIY HHTQEISQQI ALLNDNLLSD ASDMSQQVSK
FILSTTTS
|
|---|
| |