More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_2254 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_2310  methyl-accepting chemotaxis sensory transducer  71.94 
 
 
492 aa  665    Pseudomonas putida KT2440  Bacteria  normal  0.178377  decreased coverage  0.00000773933 
 
 
-
 
NC_010501  PputW619_1752  methyl-accepting chemotaxis sensory transducer  71.4 
 
 
492 aa  678    Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000000224536 
 
 
-
 
NC_009512  Pput_3459  methyl-accepting chemotaxis sensory transducer  72.73 
 
 
492 aa  672    Pseudomonas putida F1  Bacteria  normal  hitchhiker  0.000433284 
 
 
-
 
NC_004578  PSPTO_2254  methyl-accepting chemotaxis protein  100 
 
 
491 aa  987    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.177753  n/a   
 
 
-
 
NC_007005  Psyr_2059  histidine kinase, HAMP region: chemotaxis sensory transducer  87.37 
 
 
491 aa  821    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.116428  normal  0.539616 
 
 
-
 
NC_010322  PputGB1_1912  methyl-accepting chemotaxis sensory transducer  72.12 
 
 
492 aa  662    Pseudomonas putida GB-1  Bacteria  normal  0.407863  hitchhiker  0.000000143908 
 
 
-
 
NC_007492  Pfl01_4022  chemotaxis sensory transducer  74.44 
 
 
493 aa  706    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_27000  putative chemotaxis transducer  68.09 
 
 
490 aa  577  1.0000000000000001e-163  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2287  putative chemotaxis transducer  68.29 
 
 
490 aa  575  1.0000000000000001e-163  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0436901  n/a   
 
 
-
 
NC_009439  Pmen_2444  methyl-accepting chemotaxis sensory transducer  64.78 
 
 
489 aa  557  1e-157  Pseudomonas mendocina ymp  Bacteria  decreased coverage  0.00221824  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  42.05 
 
 
541 aa  241  2e-62  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  42.68 
 
 
712 aa  234  2.0000000000000002e-60  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  40.61 
 
 
552 aa  234  3e-60  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  49.19 
 
 
679 aa  233  5e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  40.33 
 
 
543 aa  232  1e-59  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  41.92 
 
 
552 aa  231  2e-59  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  41.09 
 
 
541 aa  230  3e-59  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  38.28 
 
 
541 aa  230  5e-59  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  38.34 
 
 
638 aa  229  6e-59  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  41.77 
 
 
712 aa  229  1e-58  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  37.29 
 
 
541 aa  229  1e-58  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  40 
 
 
640 aa  229  1e-58  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  37.99 
 
 
541 aa  227  3e-58  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  41.11 
 
 
713 aa  226  6e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  39.49 
 
 
620 aa  225  1e-57  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  40.54 
 
 
716 aa  225  2e-57  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  37.63 
 
 
564 aa  223  4e-57  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  43.73 
 
 
636 aa  223  4.9999999999999996e-57  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_004578  PSPTO_5554  methyl-accepting chemotaxis protein  40.97 
 
 
676 aa  222  9.999999999999999e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_5093  histidine kinase, HAMP region: chemotaxis sensory transducer  40.61 
 
 
676 aa  222  9.999999999999999e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  43.84 
 
 
637 aa  222  9.999999999999999e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  44.94 
 
 
572 aa  221  3e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  39.59 
 
 
620 aa  221  3e-56  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  39.71 
 
 
541 aa  220  3.9999999999999997e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  45.19 
 
 
652 aa  220  5e-56  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  44.03 
 
 
523 aa  219  7e-56  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  41.67 
 
 
638 aa  219  8.999999999999998e-56  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_008700  Sama_2880  putative methyl-accepting chemotaxis sensory transducer  35.19 
 
 
558 aa  219  1e-55  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  42.54 
 
 
647 aa  218  1e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  41.67 
 
 
638 aa  218  2e-55  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  40.06 
 
 
637 aa  217  4e-55  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  38.97 
 
 
541 aa  216  5.9999999999999996e-55  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  39.94 
 
 
634 aa  216  7e-55  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  41.72 
 
 
636 aa  216  7e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  37.96 
 
 
620 aa  216  9e-55  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  40.29 
 
 
620 aa  216  9e-55  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_007005  Psyr_1150  chemotaxis sensory transducer  40.06 
 
 
551 aa  215  9.999999999999999e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  41.03 
 
 
638 aa  216  9.999999999999999e-55  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  40.11 
 
 
674 aa  215  9.999999999999999e-55  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_004578  PSPTO_1334  methyl-accepting chemotaxis protein  40.17 
 
 
550 aa  214  2.9999999999999995e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  37.1 
 
 
620 aa  214  2.9999999999999995e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  38.26 
 
 
621 aa  213  3.9999999999999995e-54  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  42.86 
 
 
647 aa  213  4.9999999999999996e-54  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3532  methyl-accepting chemotaxis sensory transducer  39.23 
 
 
555 aa  213  4.9999999999999996e-54  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4833  chemotaxis sensory transducer  40.48 
 
 
541 aa  213  9e-54  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000956827  normal  0.082646 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  41.03 
 
 
639 aa  212  1e-53  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  40.51 
 
 
541 aa  212  1e-53  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  40.94 
 
 
650 aa  212  1e-53  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_009438  Sputcn32_3052  methyl-accepting chemotaxis sensory transducer  38.15 
 
 
554 aa  211  2e-53  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
638 aa  211  3e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_009831  Ssed_3256  methyl-accepting chemotaxis protein  37.5 
 
 
558 aa  211  3e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  41.03 
 
 
638 aa  211  3e-53  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009439  Pmen_2451  methyl-accepting chemotaxis sensory transducer  45.45 
 
 
655 aa  210  4e-53  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.932747 
 
 
-
 
NC_009092  Shew_1929  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
662 aa  210  4e-53  Shewanella loihica PV-4  Bacteria  normal  0.23754  normal  0.0188929 
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  37.2 
 
 
541 aa  210  6e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  40 
 
 
628 aa  210  6e-53  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  36.48 
 
 
541 aa  209  7e-53  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  40.29 
 
 
638 aa  209  8e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2374  methyl-accepting chemotaxis sensory transducer  39.94 
 
 
406 aa  209  8e-53  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003896  methyl-accepting chemotaxis protein  38.67 
 
 
545 aa  208  1e-52  Vibrio sp. Ex25  Bacteria  decreased coverage  0.000288698  n/a   
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  38.1 
 
 
629 aa  209  1e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0691  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
620 aa  209  1e-52  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3742  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
620 aa  209  1e-52  Shewanella baltica OS195  Bacteria  normal  normal  0.35347 
 
 
-
 
NC_008322  Shewmr7_0630  methyl-accepting chemotaxis sensory transducer  37.83 
 
 
554 aa  208  1e-52  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3551  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
620 aa  209  1e-52  Shewanella baltica OS223  Bacteria  normal  hitchhiker  0.00183884 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  41.98 
 
 
634 aa  208  2e-52  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3299  methyl-accepting chemotaxis sensory transducer  37.72 
 
 
554 aa  208  2e-52  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4382  chemotaxis sensory transducer  41.1 
 
 
738 aa  208  2e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.218372 
 
 
-
 
NC_009457  VC0395_A1249  methyl-accepting chemotaxis protein  39.77 
 
 
596 aa  208  2e-52  Vibrio cholerae O395  Bacteria  hitchhiker  0.000483868  n/a   
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  37.95 
 
 
639 aa  208  2e-52  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_008740  Maqu_0339  methyl-accepting chemotaxis sensory transducer  37.22 
 
 
558 aa  208  2e-52  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_29760  putative chemotaxis transducer  42.9 
 
 
714 aa  207  3e-52  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4706  histidine kinase, HAMP region: chemotaxis sensory transducer  40.51 
 
 
541 aa  207  3e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  39.55 
 
 
739 aa  207  3e-52  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_008577  Shewana3_3491  methyl-accepting chemotaxis sensory transducer  37.54 
 
 
554 aa  207  3e-52  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4658  chemotaxis sensory transducer, Pas/Pac sensor  45.21 
 
 
529 aa  207  3e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  36.13 
 
 
605 aa  207  3e-52  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_009665  Shew185_3619  methyl-accepting chemotaxis sensory transducer  39.81 
 
 
620 aa  207  3e-52  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3323  methyl-accepting chemotaxis sensory transducer  37.54 
 
 
554 aa  207  3e-52  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  40.29 
 
 
559 aa  207  4e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  43.17 
 
 
714 aa  206  6e-52  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  39.51 
 
 
640 aa  206  6e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_009092  Shew_2952  methyl-accepting chemotaxis sensory transducer  38.53 
 
 
541 aa  206  6e-52  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000751538  normal 
 
 
-
 
NC_009656  PSPA7_2546  putative chemotaxis transducer  42.6 
 
 
714 aa  206  6e-52  Pseudomonas aeruginosa PA7  Bacteria  normal  0.410637  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  43.41 
 
 
560 aa  206  7e-52  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_007492  Pfl01_4192  chemotaxis sensory transducer  40.75 
 
 
654 aa  206  7e-52  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1425  methyl-accepting chemotaxis sensory transducer  43.31 
 
 
438 aa  206  8e-52  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1007  methyl-accepting chemotaxis sensory transducer  37.82 
 
 
573 aa  206  8e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  0.02936  normal 
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  39.55 
 
 
647 aa  206  8e-52  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  40.13 
 
 
620 aa  206  9e-52  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
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