More than 300 homologs were found in PanDaTox collection
for query gene Lcho_3952 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010524  Lcho_3952  two component LuxR family transcriptional regulator  100 
 
 		 222 aa  445  1.0000000000000001e-124  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.173353 
 
 
-
 
NC_008825  Mpe_A3237  response regulator  77.93 
 
 		 219 aa  341  5.999999999999999e-93  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1634  two component LuxR family transcriptional regulator  43.72 
 
 		 236 aa  167  1e-40  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0598487 
 
 
-
 
NC_008825  Mpe_A1249  response regulator  41.8 
 
 		 245 aa  164  6.9999999999999995e-40  Methylibium petroleiphilum PM1  Bacteria  normal  0.0947405  normal  0.0892263 
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  36.89 
 
 		 237 aa  140  9.999999999999999e-33  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_010524  Lcho_1923  two component LuxR family transcriptional regulator  36.55 
 
 		 248 aa  139  1.9999999999999998e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.177648 
 
 
-
 
NC_012791  Vapar_3592  two component transcriptional regulator, LuxR family  38.25 
 
 		 235 aa  134  9.999999999999999e-31  Variovorax paradoxus S110  Bacteria  normal  0.356082  n/a   
 
 
-
 
NC_010002  Daci_0377  two component LuxR family transcriptional regulator  40.34 
 
 		 245 aa  126  3e-28  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_1851  two component LuxR family transcriptional regulator  30.28 
 
 		 262 aa  122  5e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.467917  normal  0.53175 
 
 
-
 
NC_012791  Vapar_0939  two component transcriptional regulator, LuxR family  31.25 
 
 		 247 aa  122  6e-27  Variovorax paradoxus S110  Bacteria  normal  0.224899  n/a   
 
 
-
 
NC_009511  Swit_0804  two component LuxR family transcriptional regulator  37.39 
 
 		 229 aa  122  6e-27  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_3373  two component LuxR family transcriptional regulator  31.25 
 
 		 262 aa  119  1.9999999999999998e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.492418  n/a   
 
 
-
 
NC_007947  Mfla_0447  two component LuxR family transcriptional regulator  35.78 
 
 		 244 aa  120  1.9999999999999998e-26  Methylobacillus flagellatus KT  Bacteria  normal  0.013193  normal  0.6128 
 
 
-
 
NC_007974  Rmet_5165  two component LuxR family transcriptional regulator  36.36 
 
 		 231 aa  120  1.9999999999999998e-26  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.162111 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  37.44 
 
 		 211 aa  120  1.9999999999999998e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_003295  RSc3161  two component response regulator transcription regulator protein  37.21 
 
 		 231 aa  119  3e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  31.73 
 
 		 222 aa  119  3e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  34.29 
 
 		 244 aa  119  3e-26  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.322421 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  34.29 
 
 		 216 aa  119  3e-26  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  33.02 
 
 		 224 aa  119  4.9999999999999996e-26  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
NC_013595  Sros_1446  response regulator receiver protein  35.62 
 
 		 209 aa  119  4.9999999999999996e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0167897  normal  0.0778626 
 
 
-
 
NC_007802  Jann_3515  two component LuxR family transcriptional regulator  35.29 
 
 		 214 aa  118  9e-26  Jannaschia sp. CCS1  Bacteria  normal  0.150532  hitchhiker  0.00248481 
 
 
-
 
NC_013530  Xcel_3326  two component transcriptional regulator, LuxR family  34.84 
 
 		 223 aa  117  9.999999999999999e-26  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_3380  two component LuxR family transcriptional regulator  31.05 
 
 		 259 aa  117  9.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.277634 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  33.79 
 
 		 230 aa  117  9.999999999999999e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.455968 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  30.73 
 
 		 213 aa  116  1.9999999999999998e-25  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_4084  two component LuxR family transcriptional regulator  35.35 
 
 		 246 aa  117  1.9999999999999998e-25  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  34.25 
 
 		 213 aa  117  1.9999999999999998e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal  1 
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  33.02 
 
 		 211 aa  116  1.9999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.265588 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  32.72 
 
 		 227 aa  116  3e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  33.18 
 
 		 207 aa  116  3e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  33.02 
 
 		 213 aa  115  5e-25  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  37.32 
 
 		 213 aa  115  6e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  33.93 
 
 		 223 aa  115  6.9999999999999995e-25  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  34.1 
 
 		 220 aa  114  1.0000000000000001e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  37.79 
 
 		 253 aa  113  2.0000000000000002e-24  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  34.98 
 
 		 218 aa  113  2.0000000000000002e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  32.23 
 
 		 215 aa  113  2.0000000000000002e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_007973  Rmet_0612  two component LuxR family transcriptional regulator  31.05 
 
 		 231 aa  113  2.0000000000000002e-24  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.105579 
 
 
-
 
NC_008781  Pnap_3628  two component LuxR family transcriptional regulator  35.38 
 
 		 292 aa  113  2.0000000000000002e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.350857 
 
 
-
 
NC_012791  Vapar_3199  two component transcriptional regulator, LuxR family  33.69 
 
 		 262 aa  113  2.0000000000000002e-24  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0074  response regulator receiver protein  33.94 
 
 		 207 aa  112  3e-24  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014151  Cfla_3337  two component transcriptional regulator, LuxR family  34.84 
 
 		 254 aa  112  3e-24  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0952095  normal  0.130531 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.03 
 
 		 222 aa  112  3e-24  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  31.53 
 
 		 237 aa  112  3e-24  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  33.18 
 
 		 222 aa  112  3e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008699  Noca_0945  response regulator receiver  33.02 
 
 		 216 aa  112  4.0000000000000004e-24  Nocardioides sp. JS614  Bacteria  normal  0.0407172  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  33.77 
 
 		 222 aa  112  4.0000000000000004e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  32.18 
 
 		 231 aa  112  4.0000000000000004e-24  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013037  Dfer_0722  two component transcriptional regulator, LuxR family  33.49 
 
 		 206 aa  112  6e-24  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.511528  normal  0.608348 
 
 
-
 
NC_011884  Cyan7425_1929  two component transcriptional regulator, LuxR family  33.03 
 
 		 209 aa  112  6e-24  Cyanothece sp. PCC 7425  Bacteria  normal  0.142226  normal  1 
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  33.49 
 
 		 222 aa  111  7.000000000000001e-24  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.764026 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  33.72 
 
 		 224 aa  112  7.000000000000001e-24  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  33.94 
 
 		 220 aa  111  1.0000000000000001e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal  1 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  31.98 
 
 		 228 aa  110  1.0000000000000001e-23  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_007948  Bpro_2543  two component LuxR family transcriptional regulator  29.36 
 
 		 230 aa  111  1.0000000000000001e-23  Polaromonas sp. JS666  Bacteria  normal  0.149636  normal  0.0443917 
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  34.58 
 
 		 213 aa  111  1.0000000000000001e-23  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_009380  Strop_1577  response regulator receiver  31.8 
 
 		 212 aa  110  1.0000000000000001e-23  Salinispora tropica CNB-440  Bacteria  normal  1  normal  0.967001 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  32.41 
 
 		 242 aa  110  2.0000000000000002e-23  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  32.58 
 
 		 216 aa  110  2.0000000000000002e-23  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_3835  two component LuxR family transcriptional regulator  32.73 
 
 		 217 aa  110  2.0000000000000002e-23  Frankia sp. EAN1pec  Bacteria  normal  0.760782  normal  0.0940778 
 
 
-
 
NC_013947  Snas_3676  two component transcriptional regulator, LuxR family  32.42 
 
 		 214 aa  110  2.0000000000000002e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0625047  normal  0.0780809 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  32.58 
 
 		 217 aa  109  3e-23  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010718  Nther_0692  two component transcriptional regulator, LuxR family  32.7 
 
 		 213 aa  109  3e-23  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  32.57 
 
 		 220 aa  109  3e-23  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_011992  Dtpsy_1772  two component transcriptional regulator, LuxR family  31.77 
 
 		 262 aa  109  3e-23  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.94 
 
 		 230 aa  109  4.0000000000000004e-23  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_009953  Sare_1528  two component LuxR family transcriptional regulator  31.34 
 
 		 212 aa  109  4.0000000000000004e-23  Salinispora arenicola CNS-205  Bacteria  normal  0.212037  hitchhiker  0.000165031 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  29.49 
 
 		 235 aa  109  4.0000000000000004e-23  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal  1 
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  32.71 
 
 		 216 aa  109  4.0000000000000004e-23  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  30.73 
 
 		 220 aa  108  5e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  33.79 
 
 		 232 aa  108  5e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  32.13 
 
 		 212 aa  108  6e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_009972  Haur_2171  two component LuxR family transcriptional regulator  32.74 
 
 		 218 aa  108  7.000000000000001e-23  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0762379  n/a   
 
 
-
 
NC_007333  Tfu_1403  LuxR response regulator receiver  32.27 
 
 		 214 aa  107  1e-22  Thermobifida fusca YX  Bacteria  normal  0.676683  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  31.08 
 
 		 237 aa  107  1e-22  Frankia sp. CcI3  Bacteria  normal  0.272345  normal  1 
 
 
-
 
NC_010184  BcerKBAB4_0919  two component LuxR family transcriptional regulator  28.85 
 
 		 214 aa  107  1e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_2130  DNA-binding response regulator, LuxR family  34.86 
 
 		 222 aa  107  2e-22  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1940  LuxR response regulator receiver  35.67 
 
 		 222 aa  107  2e-22  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.95717  normal  1 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  31.8 
 
 		 217 aa  106  2e-22  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  31.36 
 
 		 219 aa  106  2e-22  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  33.93 
 
 		 213 aa  106  2e-22  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_013510  Tcur_1651  two component transcriptional regulator, LuxR family  32.58 
 
 		 218 aa  106  3e-22  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000163278  n/a   
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  32.88 
 
 		 217 aa  106  3e-22  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  33.5 
 
 		 250 aa  106  3e-22  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  32.58 
 
 		 209 aa  105  4e-22  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_4219  response regulator receiver protein  33.64 
 
 		 217 aa  105  4e-22  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.0092025  hitchhiker  0.000784643 
 
 
-
 
NC_013235  Namu_4738  two component transcriptional regulator, LuxR family  31.46 
 
 		 233 aa  105  5e-22  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  32.99 
 
 		 238 aa  105  5e-22  Frankia sp. CcI3  Bacteria  normal  1  normal  0.135118 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  31.96 
 
 		 211 aa  105  6e-22  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0337978 
 
 
-
 
NC_014148  Plim_0373  response regulator receiver  31.51 
 
 		 220 aa  105  6e-22  Planctomyces limnophilus DSM 3776  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.93 
 
 		 226 aa  105  7e-22  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  33.69 
 
 		 241 aa  105  7e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.858367 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  31.8 
 
 		 213 aa  105  8e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.0500394 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  32.13 
 
 		 225 aa  105  8e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal  1 
 
 
-
 
NC_011729  PCC7424_0164  two component transcriptional regulator, LuxR family  29.82 
 
 		 234 aa  104  9e-22  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0441129 
 
 
-
 
NC_009921  Franean1_4979  two component LuxR family transcriptional regulator  29.77 
 
 		 231 aa  104  9e-22  Frankia sp. EAN1pec  Bacteria  normal  0.889239  normal  0.507767 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  32.89 
 
 		 223 aa  104  1e-21  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal  1 
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  33.15 
 
 		 225 aa  104  1e-21  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  33.02 
 
 		 219 aa  104  1e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>