Gene Amir_5375 details

Gene Information

• Locus tag: Amir_5375
• ID: 8329577
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 6387312
• End bp: 6387968
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 644945812
• Product: two component transcriptional regulator, LuxR family
• Protein accession: YP_003103040
• Protein GI: 256379380
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGCGCGG TGCGACCGCT GCGGGTGCTG GTGGTGGACG ACCACCCGAT GTTCCGGTTC 
GGGCTGTCGG CGGTGCTGGC GTCCTCACCG GAGATCACCG TGGTCGGCGA GGCGTCGGGC 
GGCGGGATGG GCGTCGAGCT GGCGGCGGCG CTGCGGCCGG ACGTGGTCGT GATGGACCTG 
AACATGCCGG ACCTGGGCGG GGTGGAGGCG ACGCGGCGCG TCGTGGCCGA GCACCCCGGC 
GCGCGGGTCC TGGTGCTGAC GATGTTCGAC GACGACGACT CGGTGTTCGC GGCGATGCGC 
GCGGGCGCGC TCGGCTACCT GCTGAAGGCC TCGCAGCCGC AGCAGATCGT GCGGGCGGTG 
CGGGCGGTGT CCGAGGGCGA GGCGATCTTC AGCCCGGCGA TCGCGGGCCG GTTGCTGGCG 
TACTTCGGCG CACCCGCGCA GCCGCGTCCC GAGACGTTCC CGGAGCTGAC GTCGCGGGAG 
CGCGAGGTGC TGCGGCTGAT GGCAGGCGGC GAGGGCAACG GGGCGATCGC GCGGGGGCTG 
GTGCTGAGCC CGAAGACGGT GCGCAACCAC GTGTCGAACA TCCTGCGGAA GCTGCACGTG 
GCCGACCGGG CGGAAGCGGT GGCGCGGGCC CGCGAGGCCG GGATGGGACA ACGATGA 

 

Protein sequence

MSAVRPLRVL VVDDHPMFRF GLSAVLASSP EITVVGEASG GGMGVELAAA LRPDVVVMDL 
NMPDLGGVEA TRRVVAEHPG ARVLVLTMFD DDDSVFAAMR AGALGYLLKA SQPQQIVRAV 
RAVSEGEAIF SPAIAGRLLA YFGAPAQPRP ETFPELTSRE REVLRLMAGG EGNGAIARGL 
VLSPKTVRNH VSNILRKLHV ADRAEAVARA REAGMGQR