| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_3952 |
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| Symbol | |
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| ID | 6162568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | + |
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| Start bp | 4432276 |
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| End bp | 4432944 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641666730 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001792971 |
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| Protein GI | 171060622 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.173353 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGA TTCTGCTGCT TGAAGACCTG CCCGAAATCC GCGCCTACCT GCGAGCGCTG
GTGGTGCAGG TGTTCCCCGG TTCGACCGTC GTCGAATCGG CCCGCATCCA CGACGCGCTG
CAACAGGTCT CGGCCCAACG CTTCGATCTG GCGATGGTCG ACCTCGGCCT GCCCGACGGT
TCGGGCGTCA AGGTGGTGCA GGCGCTGCGC GACCAGCAGC CCGATGCGCA GAGCGTGGTC
GTCACCATCC ACGACGACGA CGATCACCTG TTTCCCGCCC TGCAGGCCGG CGCCTACGGC
TACCTGCTCA AGGAGCAGCC GCGCGAGCAG CTGATGGAGC ACCTGCAGCG CATCAGCCAG
GGCGAGCCGC CACTGTCACC GTCGATCGCG CGGCGCATGA TTTCGTACTT CTCGGCGCAG
GCCAACCGGC CGCAGGCCTA TCAGCCGACC ACCGACCAGC TGATGCCCAA CGTGCAGCTG
ACCGAACGCG AACGCGAGGT GCTGCTGCGC GTGGCCAAGG GCTTCACGCT GCCCGAGATC
GGCGTGCAGC TGGGCTTGAG CCGCCACACC ATCGCCGACT ACGTCAAGCA GATCTACCGC
AAGCTCAACG TGAGCTCGCG CGCCGAAGCC GCGCTCGAAG CGCAGCGCCT GGGCCTGTTC
CGGCGCTGA
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| Protein sequence | MKQILLLEDL PEIRAYLRAL VVQVFPGSTV VESARIHDAL QQVSAQRFDL AMVDLGLPDG
SGVKVVQALR DQQPDAQSVV VTIHDDDDHL FPALQAGAYG YLLKEQPREQ LMEHLQRISQ
GEPPLSPSIA RRMISYFSAQ ANRPQAYQPT TDQLMPNVQL TEREREVLLR VAKGFTLPEI
GVQLGLSRHT IADYVKQIYR KLNVSSRAEA ALEAQRLGLF RR
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