More than 300 homologs were found in PanDaTox collection
for query gene Rfer_3373 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007908  Rfer_3373  two component LuxR family transcriptional regulator  100 
 
 		 262 aa  535  1e-151  Rhodoferax ferrireducens T118  Bacteria  normal  0.492418  n/a   
 
 
-
 
NC_012791  Vapar_0939  two component transcriptional regulator, LuxR family  64.98 
 
 		 247 aa  300  2e-80  Variovorax paradoxus S110  Bacteria  normal  0.224899  n/a   
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  46.38 
 
 		 237 aa  201  9.999999999999999e-51  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_008781  Pnap_4084  two component LuxR family transcriptional regulator  43.46 
 
 		 246 aa  179  2.9999999999999997e-44  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc3161  two component response regulator transcription regulator protein  41.53 
 
 		 231 aa  162  4.0000000000000004e-39  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_0377  two component LuxR family transcriptional regulator  39.5 
 
 		 245 aa  154  2e-36  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_0804  two component LuxR family transcriptional regulator  38.37 
 
 		 229 aa  150  2e-35  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_1851  two component LuxR family transcriptional regulator  33.47 
 
 		 262 aa  128  8.000000000000001e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.467917  normal  0.53175 
 
 
-
 
NC_008825  Mpe_A3237  response regulator  31.2 
 
 		 219 aa  126  3e-28  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007802  Jann_3515  two component LuxR family transcriptional regulator  37.61 
 
 		 214 aa  125  5e-28  Jannaschia sp. CCS1  Bacteria  normal  0.150532  hitchhiker  0.00248481 
 
 
-
 
NC_008781  Pnap_3628  two component LuxR family transcriptional regulator  34.69 
 
 		 292 aa  123  2e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.350857 
 
 
-
 
NC_012791  Vapar_3592  two component transcriptional regulator, LuxR family  35.17 
 
 		 235 aa  122  6e-27  Variovorax paradoxus S110  Bacteria  normal  0.356082  n/a   
 
 
-
 
NC_010524  Lcho_3952  two component LuxR family transcriptional regulator  31.25 
 
 		 222 aa  119  3e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.173353 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  36.28 
 
 		 211 aa  119  4.9999999999999996e-26  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_007974  Rmet_5165  two component LuxR family transcriptional regulator  35.44 
 
 		 231 aa  118  7e-26  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.162111 
 
 
-
 
NC_007947  Mfla_0447  two component LuxR family transcriptional regulator  34.47 
 
 		 244 aa  117  1.9999999999999998e-25  Methylobacillus flagellatus KT  Bacteria  normal  0.013193  normal  0.6128 
 
 
-
 
NC_011992  Dtpsy_1772  two component transcriptional regulator, LuxR family  33.19 
 
 		 262 aa  117  1.9999999999999998e-25  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_007973  Rmet_0612  two component LuxR family transcriptional regulator  36.21 
 
 		 231 aa  117  3e-25  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.105579 
 
 
-
 
NC_007948  Bpro_2543  two component LuxR family transcriptional regulator  33.62 
 
 		 230 aa  116  3.9999999999999997e-25  Polaromonas sp. JS666  Bacteria  normal  0.149636  normal  0.0443917 
 
 
-
 
NC_012791  Vapar_3199  two component transcriptional regulator, LuxR family  32.77 
 
 		 262 aa  115  6e-25  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_010002  Daci_3380  two component LuxR family transcriptional regulator  31.06 
 
 		 259 aa  114  2.0000000000000002e-24  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.277634 
 
 
-
 
NC_014148  Plim_0373  response regulator receiver  29.71 
 
 		 220 aa  109  4.0000000000000004e-23  Planctomyces limnophilus DSM 3776  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  34.52 
 
 		 215 aa  107  1e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  32.63 
 
 		 213 aa  107  2e-22  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.0500394 
 
 
-
 
NC_008825  Mpe_A1249  response regulator  29.37 
 
 		 245 aa  106  4e-22  Methylibium petroleiphilum PM1  Bacteria  normal  0.0947405  normal  0.0892263 
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  32.04 
 
 		 209 aa  106  5e-22  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_3120  two component transcriptional regulator, LuxR family  34.58 
 
 		 218 aa  105  5e-22  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.954631  normal  1 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  34.16 
 
 		 220 aa  106  5e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  33.62 
 
 		 223 aa  105  7e-22  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  32.07 
 
 		 213 aa  105  1e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal  1 
 
 
-
 
NC_009441  Fjoh_4735  two component LuxR family transcriptional regulator  30.53 
 
 		 209 aa  104  2e-21  Flavobacterium johnsoniae UW101  Bacteria  normal  0.545478  n/a   
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  30.64 
 
 		 229 aa  103  3e-21  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  29.79 
 
 		 222 aa  102  4e-21  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  32.77 
 
 		 222 aa  102  5e-21  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008825  Mpe_A3621  response regulatory protein  31.78 
 
 		 243 aa  101  1e-20  Methylibium petroleiphilum PM1  Bacteria  normal  0.0192509  normal  0.145723 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  29.24 
 
 		 213 aa  100  3e-20  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013530  Xcel_3326  two component transcriptional regulator, LuxR family  34.02 
 
 		 223 aa  99.4  5e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_6596  two component LuxR family transcriptional regulator  31.6 
 
 		 249 aa  99.4  5e-20  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  32.98 
 
 		 218 aa  99  6e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  30.74 
 
 		 216 aa  99.4  6e-20  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  32.64 
 
 		 224 aa  99  7e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal  1 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  32.65 
 
 		 225 aa  98.6  8e-20  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  32.46 
 
 		 227 aa  98.6  9e-20  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013525  Tter_1132  two component transcriptional regulator, LuxR family  30.96 
 
 		 214 aa  98.2  1e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  31.4 
 
 		 226 aa  97.4  2e-19  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_010571  Oter_0262  two component LuxR family transcriptional regulator  31.25 
 
 		 217 aa  97.8  2e-19  Opitutus terrae PB90-1  Bacteria  normal  0.153662  normal  1 
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  28.63 
 
 		 209 aa  97.8  2e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
NC_014213  Mesil_3486  hypothetical protein  35.15 
 
 		 206 aa  97.4  2e-19  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  30.89 
 
 		 234 aa  97.1  3e-19  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.336237 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  32.39 
 
 		 227 aa  96.3  4e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_009523  RoseRS_0938  two component LuxR family transcriptional regulator  31.3 
 
 		 242 aa  96.7  4e-19  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010644  Emin_0306  two component LuxR family transcriptional regulator  26.67 
 
 		 215 aa  96.3  5e-19  Elusimicrobium minutum Pei191  Bacteria  unclonable  0.000000000161342  hitchhiker  0.00000159266 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  33.47 
 
 		 228 aa  96.3  5e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  30.33 
 
 		 228 aa  95.9  5e-19  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_4439  two component transcriptional regulator, LuxR family  33.76 
 
 		 224 aa  95.9  5e-19  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_013757  Gobs_2145  two component transcriptional regulator, LuxR family  29.69 
 
 		 220 aa  95.9  5e-19  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0196231  n/a   
 
 
-
 
NC_014158  Tpau_2414  two component transcriptional regulator, LuxR family  29.79 
 
 		 215 aa  95.9  6e-19  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  28.69 
 
 		 207 aa  95.9  6e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_011729  PCC7424_1418  two component transcriptional regulator, LuxR family  31.47 
 
 		 249 aa  95.5  7e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  1 
 
 
-
 
NC_013595  Sros_3519  response regulator receiver protein  31.77 
 
 		 220 aa  95.1  1e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  30.29 
 
 		 236 aa  94.7  1e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013552  DhcVS_374  DNA-binding response regulator, LuxR family  27.62 
 
 		 232 aa  94.7  1e-18  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.0000120759  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  28.4 
 
 		 253 aa  94  2e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  30.48 
 
 		 217 aa  94  2e-18  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  31.55 
 
 		 224 aa  94.4  2e-18  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_0279  response regulator receiver protein  32.34 
 
 		 216 aa  94.4  2e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  30.61 
 
 		 242 aa  94.4  2e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  30.25 
 
 		 206 aa  94  2e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal  1 
 
 
-
 
NC_002936  DET0432  LuxR family DNA-binding response regulator  27.62 
 
 		 232 aa  93.6  3e-18  Dehalococcoides ethenogenes 195  Bacteria  hitchhiker  0.00543066  n/a   
 
 
-
 
NC_013037  Dfer_0722  two component transcriptional regulator, LuxR family  28.89 
 
 		 206 aa  93.6  3e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.511528  normal  0.608348 
 
 
-
 
NC_009455  DehaBAV1_0409  two component LuxR family transcriptional regulator  27.5 
 
 		 232 aa  93.6  3e-18  Dehalococcoides sp. BAV1  Bacteria  normal  0.135269  n/a   
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  32.6 
 
 		 218 aa  93.6  3e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  31.91 
 
 		 230 aa  94  3e-18  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  30.51 
 
 		 219 aa  93.6  3e-18  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal  1 
 
 
-
 
NC_013739  Cwoe_0615  two component transcriptional regulator, LuxR family  31.93 
 
 		 216 aa  93.2  4e-18  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_1634  two component LuxR family transcriptional regulator  32.45 
 
 		 236 aa  92.8  5e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0598487 
 
 
-
 
NC_013037  Dfer_0724  two component transcriptional regulator, LuxR family  27.75 
 
 		 210 aa  92.4  6e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.836709 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.01 
 
 		 226 aa  92.8  6e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  29.29 
 
 		 224 aa  92.4  6e-18  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  28.45 
 
 		 219 aa  92.4  7e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  30.99 
 
 		 226 aa  92.4  7e-18  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  28.69 
 
 		 223 aa  92  8e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_007413  Ava_4096  two component LuxR family transcriptional regulator  30.99 
 
 		 237 aa  92  9e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.811447  normal  0.807841 
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  29.96 
 
 		 235 aa  92  9e-18  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal  1 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  28.69 
 
 		 209 aa  91.7  1e-17  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  30.08 
 
 		 207 aa  91.3  1e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  29.41 
 
 		 303 aa  91.7  1e-17  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.887336 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  30.37 
 
 		 221 aa  91.3  1e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_014210  Ndas_4009  two component transcriptional regulator, LuxR family  30.05 
 
 		 231 aa  91.7  1e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0669057  normal  0.324745 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  32.98 
 
 		 231 aa  91.3  1e-17  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.176081 
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  31.2 
 
 		 226 aa  91.7  1e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014158  Tpau_0915  two component transcriptional regulator, LuxR family  32.88 
 
 		 223 aa  91.7  1e-17  Tsukamurella paurometabola DSM 20162  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_2525  two component transcriptional regulator, LuxR family  31.69 
 
 		 215 aa  91.7  1e-17  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_0717  two component transcriptional regulator, LuxR family  28.51 
 
 		 209 aa  90.5  2e-17  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.854815  normal  0.189113 
 
 
-
 
NC_007347  Reut_A1734  two component LuxR family transcriptional regulator  33.33 
 
 		 257 aa  90.9  2e-17  Ralstonia eutropha JMP134  Bacteria  normal  0.159279  n/a   
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  31.25 
 
 		 228 aa  90.5  2e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008025  Dgeo_1708  two component LuxR family transcriptional regulator  31.72 
 
 		 221 aa  90.9  2e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  0.685529 
 
 
-
 
NC_013521  Sked_21600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.04 
 
 		 222 aa  90.9  2e-17  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.49613  normal  1 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  28.69 
 
 		 233 aa  90.9  2e-17  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  28.09 
 
 		 234 aa  91.3  2e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0224272 
 
 
-
 
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