More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4986 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  100 
 
 		 237 aa  478  1e-134  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_007908  Rfer_3373  two component LuxR family transcriptional regulator  46.38 
 
 		 262 aa  201  8e-51  Rhodoferax ferrireducens T118  Bacteria  normal  0.492418  n/a   
 
 
-
 
NC_012791  Vapar_0939  two component transcriptional regulator, LuxR family  48.9 
 
 		 247 aa  201  9.999999999999999e-51  Variovorax paradoxus S110  Bacteria  normal  0.224899  n/a   
 
 
-
 
NC_008781  Pnap_4084  two component LuxR family transcriptional regulator  46 
 
 		 246 aa  192  3e-48  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_003295  RSc3161  two component response regulator transcription regulator protein  45.98 
 
 		 231 aa  184  1.0000000000000001e-45  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009511  Swit_0804  two component LuxR family transcriptional regulator  45.29 
 
 		 229 aa  167  2e-40  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010002  Daci_0377  two component LuxR family transcriptional regulator  43.61 
 
 		 245 aa  158  7e-38  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012791  Vapar_3592  two component transcriptional regulator, LuxR family  43.75 
 
 		 235 aa  152  5e-36  Variovorax paradoxus S110  Bacteria  normal  0.356082  n/a   
 
 
-
 
NC_007802  Jann_3515  two component LuxR family transcriptional regulator  41.07 
 
 		 214 aa  144  1e-33  Jannaschia sp. CCS1  Bacteria  normal  0.150532  hitchhiker  0.00248481 
 
 
-
 
NC_007973  Rmet_0612  two component LuxR family transcriptional regulator  40.97 
 
 		 231 aa  144  1e-33  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.105579 
 
 
-
 
NC_008825  Mpe_A3237  response regulator  38.84 
 
 		 219 aa  144  1e-33  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010524  Lcho_3952  two component LuxR family transcriptional regulator  36.89 
 
 		 222 aa  140  9.999999999999999e-33  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.173353 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  38.32 
 
 		 211 aa  139  3.9999999999999997e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_3199  two component transcriptional regulator, LuxR family  38.5 
 
 		 262 aa  134  9e-31  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  36.82 
 
 		 215 aa  134  9.999999999999999e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  39.29 
 
 		 222 aa  134  9.999999999999999e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  35.81 
 
 		 222 aa  133  1.9999999999999998e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  36.16 
 
 		 209 aa  130  1.0000000000000001e-29  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  36.89 
 
 		 222 aa  129  4.0000000000000003e-29  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal  1 
 
 
-
 
NC_007947  Mfla_0447  two component LuxR family transcriptional regulator  37.23 
 
 		 244 aa  129  5.0000000000000004e-29  Methylobacillus flagellatus KT  Bacteria  normal  0.013193  normal  0.6128 
 
 
-
 
NC_007974  Rmet_5165  two component LuxR family transcriptional regulator  39.91 
 
 		 231 aa  129  5.0000000000000004e-29  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.162111 
 
 
-
 
NC_014148  Plim_0373  response regulator receiver  35.14 
 
 		 220 aa  129  5.0000000000000004e-29  Planctomyces limnophilus DSM 3776  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  36.24 
 
 		 228 aa  128  6e-29  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013037  Dfer_0722  two component transcriptional regulator, LuxR family  37.85 
 
 		 206 aa  128  9.000000000000001e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.511528  normal  0.608348 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  36.68 
 
 		 223 aa  127  1.0000000000000001e-28  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.0556432 
 
 
-
 
NC_007347  Reut_A1734  two component LuxR family transcriptional regulator  37.97 
 
 		 257 aa  127  2.0000000000000002e-28  Ralstonia eutropha JMP134  Bacteria  normal  0.159279  n/a   
 
 
-
 
NC_007948  Bpro_2543  two component LuxR family transcriptional regulator  36.16 
 
 		 230 aa  127  2.0000000000000002e-28  Polaromonas sp. JS666  Bacteria  normal  0.149636  normal  0.0443917 
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  37.05 
 
 		 212 aa  126  2.0000000000000002e-28  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_013525  Tter_0799  two component transcriptional regulator, LuxR family  34.35 
 
 		 226 aa  126  4.0000000000000003e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  37.22 
 
 		 213 aa  126  4.0000000000000003e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.0500394 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  37.39 
 
 		 227 aa  125  4.0000000000000003e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  34.82 
 
 		 224 aa  125  5e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_0827  response regulator receiver protein  37.22 
 
 		 217 aa  125  6e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  37.23 
 
 		 213 aa  125  7e-28  Brachybacterium faecium DSM 4810  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  34.82 
 
 		 219 aa  124  9e-28  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  35.71 
 
 		 207 aa  123  2e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  34.98 
 
 		 213 aa  123  2e-27  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  36.87 
 
 		 209 aa  123  2e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  36.04 
 
 		 220 aa  123  3e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_008781  Pnap_1851  two component LuxR family transcriptional regulator  33.33 
 
 		 262 aa  123  3e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.467917  normal  0.53175 
 
 
-
 
NC_013947  Snas_3040  two component transcriptional regulator, LuxR family  34.84 
 
 		 224 aa  122  4e-27  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0154763  normal  1 
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  36.16 
 
 		 211 aa  122  4e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0451998 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  34.76 
 
 		 234 aa  122  5e-27  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  0.336237 
 
 
-
 
NC_009441  Fjoh_4735  two component LuxR family transcriptional regulator  32.24 
 
 		 209 aa  122  5e-27  Flavobacterium johnsoniae UW101  Bacteria  normal  0.545478  n/a   
 
 
-
 
NC_008825  Mpe_A3621  response regulatory protein  35.71 
 
 		 243 aa  122  6e-27  Methylibium petroleiphilum PM1  Bacteria  normal  0.0192509  normal  0.145723 
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  35 
 
 		 211 aa  122  6e-27  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.265588 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  34.98 
 
 		 207 aa  122  7e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  36.8 
 
 		 234 aa  121  8e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0224272 
 
 
-
 
NC_013595  Sros_0277  response regulator receiver protein  35.84 
 
 		 214 aa  120  9.999999999999999e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_4096  two component LuxR family transcriptional regulator  33.91 
 
 		 237 aa  121  9.999999999999999e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  0.811447  normal  0.807841 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.04 
 
 		 221 aa  120  1.9999999999999998e-26  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  33.48 
 
 		 211 aa  120  1.9999999999999998e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0337978 
 
 
-
 
NC_011992  Dtpsy_1772  two component transcriptional regulator, LuxR family  33.33 
 
 		 262 aa  120  1.9999999999999998e-26  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  34.08 
 
 		 213 aa  119  3e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  33.48 
 
 		 236 aa  119  3e-26  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_013037  Dfer_4502  two component transcriptional regulator, LuxR family  31.7 
 
 		 205 aa  120  3e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  0.438194 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  36.49 
 
 		 213 aa  119  3e-26  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  35.56 
 
 		 213 aa  119  4.9999999999999996e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal  1 
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  34.25 
 
 		 213 aa  119  4.9999999999999996e-26  Frankia sp. CcI3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011729  PCC7424_0164  two component transcriptional regulator, LuxR family  33.05 
 
 		 234 aa  119  4.9999999999999996e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0441129 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  34.33 
 
 		 253 aa  119  4.9999999999999996e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_4439  two component transcriptional regulator, LuxR family  36.65 
 
 		 224 aa  118  6e-26  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_0928  response regulator receiver protein  36 
 
 		 207 aa  118  7e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0707495  normal  1 
 
 
-
 
NC_010002  Daci_3380  two component LuxR family transcriptional regulator  33.63 
 
 		 259 aa  118  7.999999999999999e-26  Delftia acidovorans SPH-1  Bacteria  normal  1  normal  0.277634 
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  34.68 
 
 		 212 aa  118  7.999999999999999e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  32.26 
 
 		 209 aa  118  7.999999999999999e-26  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  31.84 
 
 		 215 aa  118  7.999999999999999e-26  Bacillus cereus B4264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009675  Anae109_2743  two component LuxR family transcriptional regulator  35.96 
 
 		 215 aa  118  9e-26  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.231043  normal  1 
 
 
-
 
NC_008781  Pnap_3628  two component LuxR family transcriptional regulator  33.18 
 
 		 292 aa  117  9.999999999999999e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.350857 
 
 
-
 
NC_013061  Phep_1616  response regulator receiver  29.63 
 
 		 210 aa  117  9.999999999999999e-26  Pedobacter heparinus DSM 2366  Bacteria  normal  0.869432  normal  1 
 
 
-
 
NC_012803  Mlut_18530  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.68 
 
 		 209 aa  117  9.999999999999999e-26  Micrococcus luteus NCTC 2665  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  32.91 
 
 		 230 aa  117  9.999999999999999e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  34.44 
 
 		 234 aa  117  1.9999999999999998e-25  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.243741 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  37.33 
 
 		 221 aa  117  1.9999999999999998e-25  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  28.02 
 
 		 228 aa  117  1.9999999999999998e-25  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  36.16 
 
 		 221 aa  117  1.9999999999999998e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  30.94 
 
 		 210 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8802  Bacteria  normal  1  normal  0.147525 
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  30.94 
 
 		 210 aa  117  1.9999999999999998e-25  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  34.68 
 
 		 223 aa  117  1.9999999999999998e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.172592 
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  32.74 
 
 		 215 aa  116  3e-25  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.6 
 
 		 226 aa  116  3e-25  Sanguibacter keddieii DSM 10542  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  35.9 
 
 		 242 aa  116  3e-25  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  35.48 
 
 		 241 aa  116  3e-25  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.858367 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  32.74 
 
 		 215 aa  116  3e-25  Bacillus weihenstephanensis KBAB4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  31.92 
 
 		 221 aa  115  3.9999999999999997e-25  Thermobifida fusca YX  Bacteria  normal  1  n/a   
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.46 
 
 		 227 aa  116  3.9999999999999997e-25  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  35.27 
 
 		 211 aa  115  3.9999999999999997e-25  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_014211  Ndas_4922  two component transcriptional regulator, LuxR family  35.43 
 
 		 206 aa  115  5e-25  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0302523  normal  1 
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  32.74 
 
 		 215 aa  115  6e-25  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  32.74 
 
 		 215 aa  115  6e-25  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  1  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  32.74 
 
 		 215 aa  115  6e-25  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  32.74 
 
 		 215 aa  115  6e-25  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  32.74 
 
 		 215 aa  115  6e-25  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  35.68 
 
 		 219 aa  115  6e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal  1 
 
 
-
 
NC_013131  Caci_0094  two component transcriptional regulator, LuxR family  33.33 
 
 		 233 aa  115  6e-25  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  0.0277195 
 
 
-
 
NC_009767  Rcas_1579  two component LuxR family transcriptional regulator  32.91 
 
 		 242 aa  115  6e-25  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008578  Acel_0518  two component LuxR family transcriptional regulator  33.48 
 
 		 225 aa  115  6.9999999999999995e-25  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.665179 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  32.74 
 
 		 215 aa  115  7.999999999999999e-25  Bacillus cereus ATCC 10987  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  32.29 
 
 		 215 aa  115  7.999999999999999e-25  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  36.32 
 
 		 209 aa  114  8.999999999999998e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
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