More than 300 homologs were found in PanDaTox collection
for query gene Phep_1616 on replicon NC_013061
Organism: Pedobacter heparinus DSM 2366



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013061  Phep_1616  response regulator receiver  100 
 
 
210 aa  424  1e-118  Pedobacter heparinus DSM 2366  Bacteria  normal  0.869432  normal 
 
 
-
 
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  41.21 
 
 
222 aa  157  1e-37  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  35.85 
 
 
215 aa  140  1.9999999999999998e-32  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  35 
 
 
211 aa  135  4e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  34.1 
 
 
222 aa  135  5e-31  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013132  Cpin_4551  two component transcriptional regulator, LuxR family  38.54 
 
 
208 aa  132  3.9999999999999996e-30  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.000124934  normal  0.0275678 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  37.19 
 
 
222 aa  132  3.9999999999999996e-30  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  31.53 
 
 
208 aa  132  5e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  33.97 
 
 
224 aa  130  1.0000000000000001e-29  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  33.64 
 
 
223 aa  130  2.0000000000000002e-29  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  32.68 
 
 
214 aa  129  2.0000000000000002e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  33.5 
 
 
207 aa  130  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  32.68 
 
 
232 aa  129  4.0000000000000003e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_013235  Namu_0765  two component transcriptional regulator, LuxR family  32.06 
 
 
222 aa  128  5.0000000000000004e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  35.16 
 
 
230 aa  128  7.000000000000001e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0722  two component transcriptional regulator, LuxR family  37.19 
 
 
206 aa  128  8.000000000000001e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.511528  normal  0.608348 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  34.93 
 
 
213 aa  127  1.0000000000000001e-28  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_013037  Dfer_0724  two component transcriptional regulator, LuxR family  32.69 
 
 
210 aa  127  1.0000000000000001e-28  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.836709 
 
 
-
 
NC_013552  DhcVS_601  DNA-binding response regulator, LuxR family  33.97 
 
 
224 aa  127  1.0000000000000001e-28  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  33.49 
 
 
224 aa  126  2.0000000000000002e-28  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  33.49 
 
 
224 aa  126  2.0000000000000002e-28  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0615  two component transcriptional regulator, LuxR family  29.38 
 
 
216 aa  126  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.81 
 
 
215 aa  127  2.0000000000000002e-28  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_014148  Plim_0373  response regulator receiver  33.18 
 
 
220 aa  126  3e-28  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0262  two component LuxR family transcriptional regulator  31.68 
 
 
217 aa  126  3e-28  Opitutus terrae PB90-1  Bacteria  normal  0.153662  normal 
 
 
-
 
NC_007498  Pcar_1400  two component signal transduction response regulator  33.64 
 
 
214 aa  125  4.0000000000000003e-28  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  33.18 
 
 
234 aa  125  4.0000000000000003e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  32.86 
 
 
213 aa  125  4.0000000000000003e-28  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_009441  Fjoh_4735  two component LuxR family transcriptional regulator  35.68 
 
 
209 aa  125  4.0000000000000003e-28  Flavobacterium johnsoniae UW101  Bacteria  normal  0.545478  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  32.88 
 
 
225 aa  125  6e-28  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  29.06 
 
 
209 aa  125  6e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  34.39 
 
 
225 aa  125  7e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_014151  Cfla_2683  two component transcriptional regulator, LuxR family  30.96 
 
 
209 aa  124  8.000000000000001e-28  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  31.19 
 
 
224 aa  124  9e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007498  Pcar_0978  two component signal transduction response regulator  33.49 
 
 
223 aa  124  1e-27  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0402933  n/a   
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  34.78 
 
 
210 aa  124  1e-27  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  31.82 
 
 
211 aa  123  2e-27  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  34.3 
 
 
210 aa  123  2e-27  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  33.33 
 
 
213 aa  123  2e-27  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  30.95 
 
 
213 aa  123  2e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  32.41 
 
 
234 aa  123  2e-27  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  33.33 
 
 
213 aa  123  2e-27  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_013595  Sros_0074  response regulator receiver protein  31.03 
 
 
207 aa  122  3e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  31.28 
 
 
218 aa  122  3e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  33.02 
 
 
253 aa  122  5e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  34.3 
 
 
210 aa  122  5e-27  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  30.39 
 
 
207 aa  122  6e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  30.14 
 
 
222 aa  121  8e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  29.81 
 
 
214 aa  121  9e-27  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  34.78 
 
 
210 aa  121  9e-27  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  32.21 
 
 
207 aa  120  9.999999999999999e-27  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  30.99 
 
 
216 aa  120  9.999999999999999e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  32.37 
 
 
211 aa  120  9.999999999999999e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  32.24 
 
 
221 aa  120  9.999999999999999e-27  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.133182 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  32.71 
 
 
234 aa  120  9.999999999999999e-27  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_013131  Caci_5428  two component transcriptional regulator, LuxR family  35.38 
 
 
201 aa  119  1.9999999999999998e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.358603 
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  34.85 
 
 
215 aa  120  1.9999999999999998e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  32.52 
 
 
227 aa  120  1.9999999999999998e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  32.49 
 
 
211 aa  120  1.9999999999999998e-26  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  30.7 
 
 
225 aa  119  1.9999999999999998e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  30.15 
 
 
210 aa  120  1.9999999999999998e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_013172  Bfae_05830  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  28.5 
 
 
238 aa  119  3e-26  Brachybacterium faecium DSM 4810  Bacteria  normal  0.388223  n/a   
 
 
-
 
NC_013757  Gobs_1030  two component transcriptional regulator, LuxR family  30.05 
 
 
212 aa  119  3.9999999999999996e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  31.71 
 
 
220 aa  119  3.9999999999999996e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  31.71 
 
 
213 aa  118  4.9999999999999996e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  31.71 
 
 
242 aa  119  4.9999999999999996e-26  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  31.25 
 
 
218 aa  119  4.9999999999999996e-26  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  32 
 
 
224 aa  118  4.9999999999999996e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_4227  two component LuxR family transcriptional regulator  33.33 
 
 
213 aa  119  4.9999999999999996e-26  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.624898 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  31.37 
 
 
218 aa  118  6e-26  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009380  Strop_3824  response regulator receiver  30.81 
 
 
228 aa  118  6e-26  Salinispora tropica CNB-440  Bacteria  normal  0.206519  normal 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  29.44 
 
 
209 aa  118  7e-26  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  30.09 
 
 
231 aa  118  7e-26  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  30.54 
 
 
213 aa  118  7.999999999999999e-26  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  31.4 
 
 
250 aa  117  9e-26  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013530  Xcel_0094  two component transcriptional regulator, LuxR family  32.84 
 
 
220 aa  117  9e-26  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  33.98 
 
 
226 aa  117  9e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  31.75 
 
 
218 aa  117  9e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  30.92 
 
 
213 aa  117  9.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  30.1 
 
 
212 aa  117  9.999999999999999e-26  Caulobacter sp. K31  Bacteria  normal  normal  0.881689 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  32.16 
 
 
226 aa  117  9.999999999999999e-26  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  30.84 
 
 
238 aa  117  9.999999999999999e-26  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  29.63 
 
 
237 aa  117  9.999999999999999e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  32.21 
 
 
220 aa  117  9.999999999999999e-26  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  28.43 
 
 
212 aa  117  9.999999999999999e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  31.37 
 
 
241 aa  117  9.999999999999999e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_013131  Caci_7346  two component transcriptional regulator, LuxR family  32.23 
 
 
211 aa  117  9.999999999999999e-26  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0451998 
 
 
-
 
NC_013132  Cpin_2387  two component transcriptional regulator, LuxR family  31.9 
 
 
207 aa  117  9.999999999999999e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.132486  normal  0.384012 
 
 
-
 
NC_013595  Sros_0928  response regulator receiver protein  30.39 
 
 
207 aa  117  9.999999999999999e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0707495  normal 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  31.96 
 
 
218 aa  117  1.9999999999999998e-25  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_0822  two component transcriptional regulator, LuxR family  30.95 
 
 
229 aa  116  1.9999999999999998e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  33.82 
 
 
210 aa  116  1.9999999999999998e-25  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  32.02 
 
 
215 aa  117  1.9999999999999998e-25  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3811  two component transcriptional regulator, LuxR family  32.35 
 
 
206 aa  116  1.9999999999999998e-25  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  hitchhiker  0.00252848 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  33.33 
 
 
216 aa  116  1.9999999999999998e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_19700  two component transcriptional regulator, LuxR family  33.17 
 
 
209 aa  117  1.9999999999999998e-25  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_2357  two component transcriptional regulator, LuxR family  32.84 
 
 
234 aa  116  1.9999999999999998e-25  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  30.33 
 
 
218 aa  116  1.9999999999999998e-25  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4214  two component LuxR family transcriptional regulator  30.81 
 
 
228 aa  116  1.9999999999999998e-25  Salinispora arenicola CNS-205  Bacteria  normal  0.0601429  normal  0.0532868 
 
 
-
 
NC_009457  VC0395_A0896  LuxR family transcriptional regulator  31.55 
 
 
216 aa  116  1.9999999999999998e-25  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
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