More than 300 homologs were found in PanDaTox collection
for query gene Plim_0373 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014148  Plim_0373  response regulator receiver  100 
 
 
220 aa  449  1e-125  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  35.38 
 
 
215 aa  146  3e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  38.76 
 
 
222 aa  144  1e-33  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  36.62 
 
 
228 aa  138  7.999999999999999e-32  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  38.43 
 
 
220 aa  137  1e-31  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  40.2 
 
 
211 aa  135  5e-31  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_0724  two component transcriptional regulator, LuxR family  36.97 
 
 
210 aa  134  8e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.836709 
 
 
-
 
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  35.78 
 
 
222 aa  133  1.9999999999999998e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  36.79 
 
 
213 aa  133  1.9999999999999998e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.2 
 
 
226 aa  133  1.9999999999999998e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  35.55 
 
 
207 aa  132  3e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  34.98 
 
 
236 aa  132  3.9999999999999996e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_011884  Cyan7425_4561  two component transcriptional regulator, LuxR family  35.94 
 
 
217 aa  132  3.9999999999999996e-30  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  36.84 
 
 
223 aa  132  5e-30  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  34.88 
 
 
228 aa  131  9e-30  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  34.91 
 
 
209 aa  130  1.0000000000000001e-29  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  35.07 
 
 
216 aa  130  2.0000000000000002e-29  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  33.81 
 
 
217 aa  129  3e-29  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0023  two component LuxR family transcriptional regulator  35.81 
 
 
221 aa  129  4.0000000000000003e-29  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.273145  hitchhiker  0.00000136124 
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  35.14 
 
 
237 aa  129  4.0000000000000003e-29  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  33.02 
 
 
231 aa  127  1.0000000000000001e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013526  Tter_2548  two component transcriptional regulator, LuxR family  33.96 
 
 
218 aa  127  1.0000000000000001e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  34.27 
 
 
237 aa  127  2.0000000000000002e-28  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  34.74 
 
 
213 aa  127  2.0000000000000002e-28  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_013061  Phep_1616  response regulator receiver  33.18 
 
 
210 aa  126  3e-28  Pedobacter heparinus DSM 2366  Bacteria  normal  0.869432  normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  34.56 
 
 
217 aa  125  4.0000000000000003e-28  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  33.64 
 
 
234 aa  125  4.0000000000000003e-28  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  33.8 
 
 
242 aa  125  4.0000000000000003e-28  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  33.8 
 
 
237 aa  125  5e-28  Frankia sp. CcI3  Bacteria  normal  0.272345  normal 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  33.03 
 
 
234 aa  125  5e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  34.26 
 
 
238 aa  124  9e-28  Frankia sp. CcI3  Bacteria  normal  normal  0.135118 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  34.26 
 
 
250 aa  124  1e-27  Frankia sp. EAN1pec  Bacteria  normal  normal  0.631776 
 
 
-
 
NC_013037  Dfer_0722  two component transcriptional regulator, LuxR family  33.66 
 
 
206 aa  124  1e-27  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.511528  normal  0.608348 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  33.33 
 
 
222 aa  123  2e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  39.01 
 
 
224 aa  123  2e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010625  Bphy_5911  two component LuxR family transcriptional regulator  32.67 
 
 
219 aa  123  3e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  35.19 
 
 
303 aa  123  3e-27  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.887336 
 
 
-
 
NC_011726  PCC8801_2623  two component transcriptional regulator, LuxR family  35.21 
 
 
210 aa  123  3e-27  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_3480  two component transcriptional regulator, LuxR family  35.21 
 
 
210 aa  123  3e-27  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.147525 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  32.71 
 
 
222 aa  122  4e-27  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_4518  two component LuxR family transcriptional regulator  37.16 
 
 
236 aa  122  5e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4080  two component transcriptional regulator, LuxR family  33.8 
 
 
241 aa  122  5e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.858367 
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  32.57 
 
 
224 aa  121  7e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  31.75 
 
 
207 aa  121  7e-27  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  35.32 
 
 
223 aa  121  7e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  31.75 
 
 
207 aa  121  7e-27  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  33.02 
 
 
235 aa  121  8e-27  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_011662  Tmz1t_1954  two component transcriptional regulator, LuxR family  33.96 
 
 
220 aa  121  9e-27  Thauera sp. MZ1T  Bacteria  normal  0.228638  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  32.08 
 
 
226 aa  120  9.999999999999999e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  33.02 
 
 
221 aa  121  9.999999999999999e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  35.32 
 
 
209 aa  120  9.999999999999999e-27  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  33.49 
 
 
253 aa  121  9.999999999999999e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  32.24 
 
 
215 aa  120  1.9999999999999998e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_008527  LACR_0967  DNA-binding response regulator  34.88 
 
 
209 aa  120  1.9999999999999998e-26  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.598364  n/a   
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  31.36 
 
 
218 aa  119  3e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_012791  Vapar_0939  two component transcriptional regulator, LuxR family  31.03 
 
 
247 aa  119  3e-26  Variovorax paradoxus S110  Bacteria  normal  0.224899  n/a   
 
 
-
 
NC_009441  Fjoh_4735  two component LuxR family transcriptional regulator  34.65 
 
 
209 aa  119  3e-26  Flavobacterium johnsoniae UW101  Bacteria  normal  0.545478  n/a   
 
 
-
 
NC_002976  SERP1384  LuxR family DNA-binding response regulator  32.08 
 
 
207 aa  119  3.9999999999999996e-26  Staphylococcus epidermidis RP62A  Bacteria  hitchhiker  0.000639089  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  34.4 
 
 
223 aa  119  3.9999999999999996e-26  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013947  Snas_6085  two component transcriptional regulator, LuxR family  34.29 
 
 
217 aa  119  3.9999999999999996e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  31.6 
 
 
225 aa  119  3.9999999999999996e-26  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  31.48 
 
 
209 aa  119  3.9999999999999996e-26  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  35.71 
 
 
228 aa  119  3.9999999999999996e-26  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013525  Tter_1109  two component transcriptional regulator, LuxR family  33.18 
 
 
218 aa  118  6e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  30.56 
 
 
223 aa  118  6e-26  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_011725  BCB4264_A2245  DNA-binding response regulator, LuxR family  31.58 
 
 
213 aa  118  7e-26  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  33.81 
 
 
221 aa  118  7e-26  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  32.55 
 
 
220 aa  118  7.999999999999999e-26  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_008781  Pnap_4084  two component LuxR family transcriptional regulator  32.63 
 
 
246 aa  118  9e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  29.52 
 
 
216 aa  117  9e-26  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  31.51 
 
 
225 aa  117  9.999999999999999e-26  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  31.31 
 
 
220 aa  117  9.999999999999999e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  32.39 
 
 
215 aa  117  9.999999999999999e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  32.54 
 
 
1648 aa  117  9.999999999999999e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008146  Mmcs_1056  two component LuxR family transcriptional regulator  36.36 
 
 
219 aa  117  9.999999999999999e-26  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  32.55 
 
 
219 aa  117  9.999999999999999e-26  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3078  DNA-binding response regulator, LuxR family  31.1 
 
 
213 aa  117  9.999999999999999e-26  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000000185138 
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  35.87 
 
 
213 aa  117  9.999999999999999e-26  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008705  Mkms_1072  two component LuxR family transcriptional regulator  36.36 
 
 
219 aa  117  9.999999999999999e-26  Mycobacterium sp. KMS  Bacteria  normal  0.562029  normal  0.0679961 
 
 
-
 
NC_009523  RoseRS_4258  two component LuxR family transcriptional regulator  34.43 
 
 
216 aa  117  9.999999999999999e-26  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  34.11 
 
 
213 aa  117  9.999999999999999e-26  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  31.67 
 
 
228 aa  117  9.999999999999999e-26  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1083  two component LuxR family transcriptional regulator  36.36 
 
 
219 aa  117  9.999999999999999e-26  Mycobacterium sp. JLS  Bacteria  normal  0.605869  normal 
 
 
-
 
NC_009483  Gura_1544  two component LuxR family transcriptional regulator  32.23 
 
 
241 aa  117  9.999999999999999e-26  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1435  two component LuxR family transcriptional regulator  31.51 
 
 
218 aa  116  1.9999999999999998e-25  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  33.64 
 
 
230 aa  117  1.9999999999999998e-25  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  31.94 
 
 
264 aa  117  1.9999999999999998e-25  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1104  two component LuxR family transcriptional regulator  34.33 
 
 
218 aa  116  1.9999999999999998e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.348687  n/a   
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  32.99 
 
 
218 aa  116  1.9999999999999998e-25  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1051  two component transcriptional regulator, LuxR family  33.33 
 
 
211 aa  116  3e-25  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.0337978 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  33.95 
 
 
221 aa  115  3e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_009675  Anae109_2743  two component LuxR family transcriptional regulator  33.49 
 
 
215 aa  116  3e-25  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.231043  normal 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  31.13 
 
 
223 aa  116  3e-25  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  34.42 
 
 
215 aa  116  3e-25  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_008148  Rxyl_2613  two component LuxR family transcriptional regulator  34.43 
 
 
207 aa  115  3.9999999999999997e-25  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_38420  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  30.88 
 
 
226 aa  115  3.9999999999999997e-25  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  36.75 
 
 
211 aa  115  3.9999999999999997e-25  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  34.11 
 
 
261 aa  115  5e-25  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_0612  two component LuxR family transcriptional regulator  35.65 
 
 
231 aa  115  5e-25  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.105579 
 
 
-
 
NC_009664  Krad_2658  two component transcriptional regulator, LuxR family  31.8 
 
 
215 aa  115  5e-25  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
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