| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4986 |
|---|
| Symbol | |
|---|
| ID | 4041848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | + |
|---|
| Start bp | 1661622 |
|---|
| End bp | 1662335 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637980407 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_587117 |
|---|
| Protein GI | 94313908 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.170484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.313407 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCACC AGCCCCCGGC GATGGACGCG GATATCCGCG TGATGCTTGT AGAAGACGAC
CCGGCCACCA GTGCCCGCCT GACTTCCGCG CTTGCCAGCG TGCCCGGCAT CCATGTGATG
GCGACCTGCC AGAACCGCGT CAGCGCCTGC GAGTGGCTGA CCGTCAATAC GCCCGATGTG
GTGCTGTGCG ACCTGGGCCT GCCCGATGGC TCCGGCATCG ACGTGATCCG CTTTGCCCGG
CGCCGGCACC CACACTGCGA GTGCATGGTC ATCACCATGT TCGGTGATGA GGCCAATGTG
CTGGCCAGCA TCTCGGCCGG GGCCACCGGC TATCTGCTCA AGGACGCTTC CGACGAAGAC
CTGCGTGCCT CTGTGCGCGA GCTTCGCGCA GGCGGCTCTC CGATGAGTCC CGTGATCGCC
CGCCGCGTCA TTAACCGGTT GCGCGATGCG AACATCCCTG CCCCGCGCGC CGTCCGTGCG
GAACCGGCGA CGCCGTTGTT ACCAGAGGCC GTTGTTGCGC TCTCCGCGCG GGAGTCCGAG
ATTCTCGACC TCGTCGCGCG CGGCTACACG TATGCGGAGA TCGCCCGGCA CCTGTCCATC
AGCGTGAATA CGGTGGCGGC CCACATCCGC AACATCTACG GCAAGTTGGC CGTGAACTCG
CGCTCCGAGG CGGTTTTCGA AGCCCACAAG CTTGGTCTGC TGAAATCGAT GTGA
|
|---|
| Protein sequence | MTHQPPAMDA DIRVMLVEDD PATSARLTSA LASVPGIHVM ATCQNRVSAC EWLTVNTPDV
VLCDLGLPDG SGIDVIRFAR RRHPHCECMV ITMFGDEANV LASISAGATG YLLKDASDED
LRASVRELRA GGSPMSPVIA RRVINRLRDA NIPAPRAVRA EPATPLLPEA VVALSARESE
ILDLVARGYT YAEIARHLSI SVNTVAAHIR NIYGKLAVNS RSEAVFEAHK LGLLKSM
|
|---|
| |