| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_0939 |
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| Symbol | |
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| ID | 7970114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 1032396 |
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| End bp | 1033139 |
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| Gene Length | 744 bp |
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| Protein Length | 247 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644791535 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002942856 |
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| Protein GI | 239813946 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.224899 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAAGC CCATGAACAT CGAGGCAACG GACACCGGGA AGACGCACCG CTGGGGCGTG
CTCGTGGTCG AGGACGACAG CCGCGCGCGC GCCTTCTTCG AGGCGAGCGT GCAGCGCAGC
GCCAGCCTTT TCTGGCTCGG AAGCGCCGGC ACGGTGCACG AGGCATTGGC GTGGATGGCC
CAGGCCACCA TCATTCCCGA CGTGCTGCTG GTCGATCTCG GCATGCCCGA CGGCAGCGGG
CTCGACGTGA TCCGCGAGGC CGTGGCGCGC TTTCCGGGTT GCGAGCCGCT GGTGATCTCG
GTCTTCGGCG ACGAGGAAAA CGTGCTGGCC AGCATCGAGG CCGGCGCCGT CGGCTACATC
CACAAGGACG CCGCGCCGGA AGACATTGCG CAGACCATCG TCGAGATGAA GGCCGGCGCC
TCGCCGATCT CGCCCATGAT CGCGCGGCGC GTGCTGGCCA AGTACCGCAG CCTGCAGCTG
GCCGGAACGC TCGCCGCCGC GCCGCCCGAG GCGGCCCTCG GCAACACCAC CACGGCGCCC
AGCCTGCTGT CCGCGCGCGA GCACGAGGTG CTGACCTTGA TCGCGCGCGG TTTTTCCTAT
GCCGAGATCG CACGCCTCAA GGGCCTGAGC GTGCATACGG TGCAGACGCA CATCAAGAAT
CTCTACGGCA AGCTGGCCGT GCACTCCAAG AGCGAGGCCG TGTTCGAGGC CACGCGCCTC
GGCCTGCTGT CCCATCCGGG GTGA
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| Protein sequence | MLKPMNIEAT DTGKTHRWGV LVVEDDSRAR AFFEASVQRS ASLFWLGSAG TVHEALAWMA
QATIIPDVLL VDLGMPDGSG LDVIREAVAR FPGCEPLVIS VFGDEENVLA SIEAGAVGYI
HKDAAPEDIA QTIVEMKAGA SPISPMIARR VLAKYRSLQL AGTLAAAPPE AALGNTTTAP
SLLSAREHEV LTLIARGFSY AEIARLKGLS VHTVQTHIKN LYGKLAVHSK SEAVFEATRL
GLLSHPG
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