More than 300 homologs were found in PanDaTox collection
for query gene Cpin_3102 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_3102  two component transcriptional regulator, LuxR family  100 
 
 
222 aa  461  1e-129  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.774177  normal  0.15342 
 
 
-
 
NC_013132  Cpin_4160  two component transcriptional regulator, LuxR family  47.32 
 
 
215 aa  177  1e-43  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0201669  normal  0.0925574 
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  40.69 
 
 
211 aa  176  3e-43  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4735  two component LuxR family transcriptional regulator  40.58 
 
 
209 aa  173  1.9999999999999998e-42  Flavobacterium johnsoniae UW101  Bacteria  normal  0.545478  n/a   
 
 
-
 
NC_013061  Phep_1616  response regulator receiver  41.21 
 
 
210 aa  157  1e-37  Pedobacter heparinus DSM 2366  Bacteria  normal  0.869432  normal 
 
 
-
 
NC_013037  Dfer_0724  two component transcriptional regulator, LuxR family  39.5 
 
 
210 aa  152  2.9999999999999998e-36  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.836709 
 
 
-
 
NC_013037  Dfer_0722  two component transcriptional regulator, LuxR family  40.87 
 
 
206 aa  149  3e-35  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.511528  normal  0.608348 
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  35.96 
 
 
213 aa  146  2.0000000000000003e-34  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  39.8 
 
 
228 aa  147  2.0000000000000003e-34  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  36.28 
 
 
226 aa  144  8.000000000000001e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  37.56 
 
 
222 aa  144  9e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  35 
 
 
226 aa  143  2e-33  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013739  Cwoe_2472  two component transcriptional regulator, LuxR family  34.12 
 
 
221 aa  142  6e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.0113125  hitchhiker  0.00367669 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  36.89 
 
 
216 aa  140  9.999999999999999e-33  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  35.48 
 
 
226 aa  139  1.9999999999999998e-32  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  37.31 
 
 
218 aa  140  1.9999999999999998e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  37.09 
 
 
223 aa  140  1.9999999999999998e-32  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  36.28 
 
 
224 aa  139  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  37.44 
 
 
218 aa  139  3.9999999999999997e-32  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  37.67 
 
 
226 aa  137  8.999999999999999e-32  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  35.24 
 
 
218 aa  137  1e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1550  two component LuxR family transcriptional regulator  36.27 
 
 
220 aa  137  1e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  35.92 
 
 
231 aa  137  1e-31  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  35.78 
 
 
222 aa  137  2e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_004116  SAG0322  DNA-binding response regulator  36.59 
 
 
213 aa  136  3.0000000000000003e-31  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  37.09 
 
 
228 aa  136  3.0000000000000003e-31  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0775  LuxR family two component transcriptional regulator  37.38 
 
 
234 aa  136  3.0000000000000003e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.336237 
 
 
-
 
NC_009674  Bcer98_0214  two component LuxR family transcriptional regulator  35.41 
 
 
220 aa  135  4e-31  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  37.32 
 
 
234 aa  135  5e-31  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  36.27 
 
 
215 aa  135  7.000000000000001e-31  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2145  two component transcriptional regulator, LuxR family  35.64 
 
 
220 aa  134  8e-31  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0196231  n/a   
 
 
-
 
NC_007333  Tfu_2950  LuxR response regulator receiver  34.83 
 
 
221 aa  134  8e-31  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_0373  response regulator receiver  35.78 
 
 
220 aa  133  1.9999999999999998e-30  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5263  DNA-binding response regulator  36.27 
 
 
215 aa  133  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  0.24037  n/a   
 
 
-
 
NC_005957  BT9727_5091  response regulator  36.27 
 
 
215 aa  133  1.9999999999999998e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5108  response regulator  36.27 
 
 
215 aa  133  1.9999999999999998e-30  Bacillus cereus E33L  Bacteria  decreased coverage  0.00235048  n/a   
 
 
-
 
NC_007530  GBAA_5661  DNA-binding response regulator  36.27 
 
 
215 aa  133  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4986  two component LuxR family transcriptional regulator  35.81 
 
 
237 aa  133  1.9999999999999998e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.170484  normal  0.313407 
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  35.44 
 
 
232 aa  134  1.9999999999999998e-30  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_013172  Bfae_00310  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.27 
 
 
213 aa  134  1.9999999999999998e-30  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3654  two component LuxR family transcriptional regulator  36.45 
 
 
221 aa  133  1.9999999999999998e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.0000210563  n/a   
 
 
-
 
NC_011773  BCAH820_5506  DNA-binding response regulator  36.27 
 
 
215 aa  133  1.9999999999999998e-30  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011831  Cagg_0340  two component transcriptional regulator, LuxR family  35.32 
 
 
217 aa  133  1.9999999999999998e-30  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00614189  hitchhiker  0.00317709 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  35.27 
 
 
302 aa  132  3e-30  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  35.32 
 
 
230 aa  132  3e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  37.5 
 
 
253 aa  132  3.9999999999999996e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  36.71 
 
 
212 aa  131  6.999999999999999e-30  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  36.54 
 
 
207 aa  131  6.999999999999999e-30  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  36.95 
 
 
227 aa  131  7.999999999999999e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  30.77 
 
 
231 aa  131  9e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013947  Snas_3676  two component transcriptional regulator, LuxR family  33.5 
 
 
214 aa  131  9e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0625047  normal  0.0780809 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  33.96 
 
 
222 aa  131  9e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  35.78 
 
 
215 aa  131  1.0000000000000001e-29  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  34.43 
 
 
219 aa  131  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  37.75 
 
 
220 aa  130  1.0000000000000001e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  34.27 
 
 
224 aa  130  1.0000000000000001e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  34.13 
 
 
210 aa  130  1.0000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  36.1 
 
 
213 aa  130  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_010717  PXO_04459  two-component system regulatory protein  36.28 
 
 
213 aa  130  1.0000000000000001e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0928  response regulator receiver protein  38.24 
 
 
207 aa  130  1.0000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0707495  normal 
 
 
-
 
NC_013235  Namu_5018  two component transcriptional regulator, LuxR family  36 
 
 
209 aa  130  1.0000000000000001e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5540  DNA-binding response regulator  35.78 
 
 
215 aa  129  2.0000000000000002e-29  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  36.1 
 
 
219 aa  130  2.0000000000000002e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  35.5 
 
 
223 aa  130  2.0000000000000002e-29  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  35.29 
 
 
215 aa  130  2.0000000000000002e-29  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2325  two component transcriptional regulator, LuxR family  32.26 
 
 
228 aa  130  2.0000000000000002e-29  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  35.27 
 
 
217 aa  129  3e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  36.36 
 
 
214 aa  129  3e-29  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.785726 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  35.02 
 
 
225 aa  129  3e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  33.5 
 
 
216 aa  129  4.0000000000000003e-29  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  33.5 
 
 
244 aa  129  4.0000000000000003e-29  Frankia sp. EAN1pec  Bacteria  normal  normal  0.322421 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  34.43 
 
 
225 aa  129  5.0000000000000004e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013739  Cwoe_0615  two component transcriptional regulator, LuxR family  34.3 
 
 
216 aa  128  5.0000000000000004e-29  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  32.39 
 
 
230 aa  128  6e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  35.65 
 
 
227 aa  128  6e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013235  Namu_0480  two component transcriptional regulator, LuxR family  34.65 
 
 
214 aa  128  7.000000000000001e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.49 
 
 
225 aa  128  7.000000000000001e-29  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  35.29 
 
 
215 aa  128  7.000000000000001e-29  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4749  two component transcriptional regulator, LuxR family  32.34 
 
 
223 aa  128  8.000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2809  two component LuxR family transcriptional regulator  35.64 
 
 
219 aa  128  8.000000000000001e-29  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  33.17 
 
 
207 aa  128  8.000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_013510  Tcur_0500  two component transcriptional regulator, LuxR family  31.1 
 
 
226 aa  128  8.000000000000001e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  33.96 
 
 
215 aa  127  9.000000000000001e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  34.13 
 
 
217 aa  127  9.000000000000001e-29  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  34.6 
 
 
234 aa  127  1.0000000000000001e-28  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  35.21 
 
 
213 aa  127  1.0000000000000001e-28  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  33.17 
 
 
218 aa  127  1.0000000000000001e-28  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_014151  Cfla_2683  two component transcriptional regulator, LuxR family  34.3 
 
 
209 aa  126  2.0000000000000002e-28  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  34.31 
 
 
213 aa  127  2.0000000000000002e-28  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  33.33 
 
 
217 aa  126  2.0000000000000002e-28  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  34.55 
 
 
239 aa  127  2.0000000000000002e-28  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  32.11 
 
 
223 aa  126  2.0000000000000002e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  33.97 
 
 
216 aa  127  2.0000000000000002e-28  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_011886  Achl_0642  two component transcriptional regulator, LuxR family  36.04 
 
 
208 aa  126  2.0000000000000002e-28  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  33.33 
 
 
223 aa  126  2.0000000000000002e-28  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  33.49 
 
 
229 aa  126  2.0000000000000002e-28  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_21850  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  32.52 
 
 
222 aa  126  3e-28  Micrococcus luteus NCTC 2665  Bacteria  normal  0.118113  n/a   
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  33.18 
 
 
218 aa  126  3e-28  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013595  Sros_3524  response regulator receiver protein  32.16 
 
 
214 aa  126  3e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0390864  normal 
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  36.82 
 
 
215 aa  126  3e-28  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>