More than 300 homologs were found in PanDaTox collection
for query gene Rmet_4715 on replicon NC_007974
Organism: Cupriavidus metallidurans CH34



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  100 
 
 
264 aa  536  1e-151  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2312  two-component response regulator transcription regulator protein  65.2 
 
 
238 aa  305  7e-82  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.500036 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  44.7 
 
 
218 aa  205  5e-52  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  43.18 
 
 
223 aa  181  1e-44  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  41.71 
 
 
216 aa  174  9.999999999999999e-43  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  42.72 
 
 
216 aa  172  5.999999999999999e-42  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  42.65 
 
 
216 aa  171  1e-41  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  39.81 
 
 
232 aa  171  2e-41  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  39.15 
 
 
232 aa  168  7e-41  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  39.81 
 
 
215 aa  166  5e-40  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  43.19 
 
 
213 aa  164  1.0000000000000001e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  38.68 
 
 
232 aa  164  2.0000000000000002e-39  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  37.61 
 
 
219 aa  163  3e-39  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  42.59 
 
 
218 aa  160  2e-38  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  40 
 
 
224 aa  160  2e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  39.23 
 
 
218 aa  159  5e-38  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  40.09 
 
 
228 aa  157  1e-37  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  41.67 
 
 
218 aa  157  2e-37  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  41.67 
 
 
218 aa  157  2e-37  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  41.9 
 
 
213 aa  157  2e-37  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  41.98 
 
 
217 aa  155  6e-37  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1317  response regulator  33.18 
 
 
220 aa  155  8e-37  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.500574  normal  0.0503905 
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  38.25 
 
 
216 aa  154  1e-36  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  39.05 
 
 
214 aa  154  1e-36  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  40.57 
 
 
223 aa  154  1e-36  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  37.26 
 
 
212 aa  152  4e-36  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  37.26 
 
 
215 aa  152  7e-36  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  40.57 
 
 
215 aa  150  1e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  38.43 
 
 
220 aa  151  1e-35  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  37.5 
 
 
216 aa  150  1e-35  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  38.89 
 
 
213 aa  150  2e-35  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  37.62 
 
 
213 aa  150  2e-35  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  37.96 
 
 
215 aa  150  2e-35  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  37.26 
 
 
216 aa  150  2e-35  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  37.44 
 
 
229 aa  149  4e-35  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  36.19 
 
 
232 aa  148  9e-35  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  40.48 
 
 
214 aa  147  1.0000000000000001e-34  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  35.98 
 
 
226 aa  147  1.0000000000000001e-34  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  34.09 
 
 
224 aa  148  1.0000000000000001e-34  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  42.03 
 
 
214 aa  148  1.0000000000000001e-34  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00509748 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  35.68 
 
 
222 aa  147  1.0000000000000001e-34  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_2253  two component transcriptional regulator, LuxR family  36.19 
 
 
216 aa  147  1.0000000000000001e-34  Geobacter bemidjiensis Bem  Bacteria  normal  0.174263  n/a   
 
 
-
 
NC_008609  Ppro_2713  two component LuxR family transcriptional regulator  39.15 
 
 
208 aa  148  1.0000000000000001e-34  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2685  two component LuxR family transcriptional regulator  34.27 
 
 
222 aa  147  1.0000000000000001e-34  Caulobacter sp. K31  Bacteria  normal  0.120511  normal 
 
 
-
 
NC_013595  Sros_6032  response regulator receiver protein  38.03 
 
 
218 aa  146  3e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.53611  normal 
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  41.55 
 
 
214 aa  146  3e-34  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0203352 
 
 
-
 
NC_009078  BURPS1106A_A3133  LuxR family DNA-binding response regulator  39.9 
 
 
215 aa  146  3e-34  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1971  two component transcriptional regulator, LuxR family  32.86 
 
 
216 aa  146  4.0000000000000006e-34  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  39.25 
 
 
215 aa  145  4.0000000000000006e-34  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  39.25 
 
 
215 aa  145  4.0000000000000006e-34  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  40 
 
 
214 aa  146  4.0000000000000006e-34  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  39.25 
 
 
215 aa  145  4.0000000000000006e-34  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  42.51 
 
 
214 aa  145  6e-34  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  37.38 
 
 
214 aa  145  6e-34  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.241819 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  37.8 
 
 
217 aa  145  6e-34  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5187  two component LuxR family transcriptional regulator  41.55 
 
 
214 aa  145  6e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_4563  two component LuxR family transcriptional regulator  41.55 
 
 
214 aa  145  6e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0560765 
 
 
-
 
NC_008543  Bcen2424_5672  two component LuxR family transcriptional regulator  41.55 
 
 
214 aa  145  6e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  hitchhiker  0.00685344 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  37.91 
 
 
224 aa  145  7.0000000000000006e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  37.22 
 
 
228 aa  145  7.0000000000000006e-34  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_010627  Bphy_7761  two component LuxR family transcriptional regulator  40.1 
 
 
213 aa  145  7.0000000000000006e-34  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  34.56 
 
 
229 aa  145  8.000000000000001e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  38.07 
 
 
220 aa  145  9e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_006349  BMAA2071  LuxR family DNA-binding response regulator  39.42 
 
 
215 aa  145  9e-34  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1463  LuxR family DNA-binding response regulator  39.42 
 
 
215 aa  145  9e-34  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  36.36 
 
 
216 aa  145  9e-34  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II2335  LuxR family DNA-binding response regulator  40.1 
 
 
215 aa  145  9e-34  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1100  LuxR family DNA-binding response regulator  39.42 
 
 
215 aa  145  9e-34  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1379  LuxR family DNA-binding response regulator  39.42 
 
 
215 aa  145  9e-34  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A2364  LuxR family DNA-binding response regulator  39.42 
 
 
215 aa  145  9e-34  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3359  two component transcriptional regulator, LuxR family  35.19 
 
 
219 aa  144  1e-33  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00321115  hitchhiker  0.000132937 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  38.97 
 
 
213 aa  144  1e-33  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  38.79 
 
 
218 aa  144  1e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  38.97 
 
 
213 aa  144  1e-33  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_010159  YpAngola_A3945  putative DNA-binding response regulator EsrB  34.43 
 
 
210 aa  144  1e-33  Yersinia pestis Angola  Bacteria  normal  0.0480381  normal 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  38.68 
 
 
215 aa  144  1e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  34.76 
 
 
226 aa  144  1e-33  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  32.87 
 
 
215 aa  144  1e-33  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_008740  Maqu_3089  two component LuxR family transcriptional regulator  35.07 
 
 
219 aa  144  1e-33  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A3248  LuxR family DNA-binding response regulator  39.42 
 
 
215 aa  144  1e-33  Burkholderia pseudomallei 668  Bacteria  normal  0.780539  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5205  two component LuxR family transcriptional regulator  35.55 
 
 
215 aa  144  1e-33  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  36.76 
 
 
212 aa  144  2e-33  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.265772 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  37.26 
 
 
213 aa  144  2e-33  Opitutus terrae PB90-1  Bacteria  normal  normal  0.226192 
 
 
-
 
NC_010465  YPK_3919  two component LuxR family transcriptional regulator  34.43 
 
 
210 aa  144  2e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  35.75 
 
 
233 aa  144  2e-33  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_009708  YpsIP31758_3833  putative DNA-binding response regulator EsrB  34.43 
 
 
210 aa  144  2e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1646  two component LuxR family transcriptional regulator  39.53 
 
 
219 aa  144  2e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.92254 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  37.04 
 
 
226 aa  143  3e-33  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  39.15 
 
 
221 aa  143  3e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  35.02 
 
 
217 aa  142  4e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_011658  BCAH187_A5591  DNA-binding response regulator  35.55 
 
 
215 aa  142  6e-33  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  37.61 
 
 
224 aa  142  6e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_011725  BCB4264_A5535  DNA-binding response regulator  35.68 
 
 
215 aa  142  6e-33  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5417  DNA-binding response regulator  35.55 
 
 
215 aa  142  7e-33  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  34.43 
 
 
230 aa  142  7e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.683214 
 
 
-
 
NC_009253  Dred_2108  two component LuxR family transcriptional regulator  35.19 
 
 
218 aa  142  7e-33  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2941  two component transcriptional regulator, LuxR family  37.09 
 
 
219 aa  141  9e-33  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.911135  n/a   
 
 
-
 
NC_011666  Msil_2271  two component transcriptional regulator, LuxR family  36.11 
 
 
223 aa  141  9e-33  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010625  Bphy_6469  two component LuxR family transcriptional regulator  40.58 
 
 
213 aa  141  9.999999999999999e-33  Burkholderia phymatum STM815  Bacteria  normal  normal  0.53826 
 
 
-
 
NC_008781  Pnap_3523  two component LuxR family transcriptional regulator  39.53 
 
 
224 aa  141  9.999999999999999e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
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