Gene CHU_1317 details

Gene Information

• Locus tag: CHU_1317
• Symbol: uhpA
• ID: 4186127
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cytophaga hutchinsonii ATCC 33406
• Kingdom: Bacteria
• Replicon accession: NC_008255
• Strand: +
• Start bp: 1530254
• End bp: 1530916
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 638071311
• Product: response regulator
• Protein accession: YP_677929
• Protein GI: 110637722
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 0.500574
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.0503905
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAGAAAA TTAATATTTT ACTGGTAGAT GATCATACCA TTGTTCGCGA TGGAATTAAA 
GCAACATTAA AAGATCAGAA AAATTTTCAT ATCGTTGGTG AAGCCGCAAA TGGATTAGAT 
GGCATTGAAG CGGTTAAACA ACTAAAACCG GATGTTGTGA TCATGGATAT CACCATGCCG 
GAGATGAGCG GTATTGAGGC AGCAGATGTA ATCTCTAAAA AATATCCGGA TTCTAAAGTG 
TTGATTTTAT CTATGCATGA TAACGAAACA TATATTTTAA AATCTGTTGA AGCAGGTGCA 
TACGGATATT TATTAAAAGA CGTTGATAAG GACGAATTTA TAAAAGCCAT TACAGCTGTT 
TACAACGGAG ATAAATATTT TAACACCGCT ATTTCGAGTG TACTGGTATC CGGCTATCTG 
AGTAAAGTAA AACAGACAGA TTCAATTCAA TCCGGGTATT CAAACGATGA ATATGAATTG 
ACCAAACGTG AAAAAGGCAT TTTGAAAATG ATCACCGATG GGAAAAATAA CAGAGAAATT 
GCAGATGGTT TAGGCATCAG TATCCGTACG ATTGAAACAC ACCGTGCTAA TATTATGAAA 
AAGCTAAAAG TAAAAAATGC CGTTGAACTT GTGCGTATTG CAATTGATGA AAAAATAGTA 
TAG 

 

Protein sequence

MKKINILLVD DHTIVRDGIK ATLKDQKNFH IVGEAANGLD GIEAVKQLKP DVVIMDITMP 
EMSGIEAADV ISKKYPDSKV LILSMHDNET YILKSVEAGA YGYLLKDVDK DEFIKAITAV 
YNGDKYFNTA ISSVLVSGYL SKVKQTDSIQ SGYSNDEYEL TKREKGILKM ITDGKNNREI 
ADGLGISIRT IETHRANIMK KLKVKNAVEL VRIAIDEKIV