More than 300 homologs were found in PanDaTox collection
for query gene RSc2312 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc2312  two-component response regulator transcription regulator protein  100 
 
 
238 aa  482  1e-135  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.500036 
 
 
-
 
NC_007974  Rmet_4715  Two component LuxR family transcriptional regulator  65.2 
 
 
264 aa  305  6e-82  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_1664  two component LuxR family transcriptional regulator  45.37 
 
 
218 aa  203  2e-51  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.49018  normal 
 
 
-
 
NC_007519  Dde_0977  two component LuxR family transcriptional regulator  47.22 
 
 
223 aa  186  2e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.00800748  n/a   
 
 
-
 
NC_009455  DehaBAV1_0945  two component LuxR family transcriptional regulator  42.52 
 
 
232 aa  179  2.9999999999999997e-44  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0829  two component LuxR family transcriptional regulator  42.45 
 
 
219 aa  179  4.999999999999999e-44  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0121621 
 
 
-
 
NC_013552  DhcVS_934  DNA-binding response regulator, LuxR family  41.7 
 
 
232 aa  177  1e-43  Dehalococcoides sp. VS  Bacteria  normal  0.717523  n/a   
 
 
-
 
NC_002936  DET1063  LuxR family DNA-binding response regulator  41.59 
 
 
232 aa  175  6e-43  Dehalococcoides ethenogenes 195  Bacteria  normal  0.815436  n/a   
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  42.52 
 
 
213 aa  162  4.0000000000000004e-39  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1293  LuxR family DNA-binding response regulator  40.48 
 
 
216 aa  162  6e-39  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  41.51 
 
 
213 aa  160  2e-38  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  41.23 
 
 
224 aa  160  2e-38  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  40.74 
 
 
216 aa  159  4e-38  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_0029  two component LuxR family transcriptional regulator  40.85 
 
 
214 aa  158  8e-38  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.317943  n/a   
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  40.38 
 
 
217 aa  157  1e-37  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0894  two component LuxR family transcriptional regulator  42.18 
 
 
217 aa  156  2e-37  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2713  two component LuxR family transcriptional regulator  41.86 
 
 
208 aa  157  2e-37  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  42.59 
 
 
218 aa  155  4e-37  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  39.25 
 
 
215 aa  155  5.0000000000000005e-37  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1406  DNA-binding response regulator  36.54 
 
 
215 aa  155  5.0000000000000005e-37  Colwellia psychrerythraea 34H  Bacteria  normal  0.253896  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  43.6 
 
 
212 aa  155  7e-37  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  38.39 
 
 
218 aa  154  1e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  42.13 
 
 
218 aa  154  2e-36  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  42.13 
 
 
218 aa  154  2e-36  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  39.23 
 
 
222 aa  152  2.9999999999999998e-36  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  40.65 
 
 
228 aa  152  2.9999999999999998e-36  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  38.07 
 
 
216 aa  152  2.9999999999999998e-36  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_009439  Pmen_1563  two component LuxR family transcriptional regulator  38.43 
 
 
214 aa  152  2.9999999999999998e-36  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.241819 
 
 
-
 
NC_008148  Rxyl_2511  two component LuxR family transcriptional regulator  37.27 
 
 
229 aa  151  8e-36  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  38.5 
 
 
232 aa  151  8.999999999999999e-36  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  34.7 
 
 
219 aa  150  1e-35  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  38.36 
 
 
222 aa  149  3e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.764026 
 
 
-
 
NC_009439  Pmen_4183  two component LuxR family transcriptional regulator  36.53 
 
 
220 aa  149  3e-35  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008751  Dvul_0670  two component LuxR family transcriptional regulator  39.15 
 
 
216 aa  149  3e-35  Desulfovibrio vulgaris DP4  Bacteria  normal  0.267154  normal 
 
 
-
 
NC_009483  Gura_0759  two component LuxR family transcriptional regulator  41.23 
 
 
217 aa  149  5e-35  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000000356105  n/a   
 
 
-
 
NC_007519  Dde_2674  two component LuxR family transcriptional regulator  35.85 
 
 
215 aa  148  6e-35  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.721789  n/a   
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  41.67 
 
 
218 aa  148  7e-35  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  36.49 
 
 
212 aa  148  8e-35  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0451  two component transcriptional regulator, LuxR family  36.67 
 
 
216 aa  148  8e-35  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2343  two component LuxR family transcriptional regulator  36.79 
 
 
211 aa  147  1.0000000000000001e-34  Dechloromonas aromatica RCB  Bacteria  normal  0.999882  normal  0.0841394 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  37.09 
 
 
233 aa  147  1.0000000000000001e-34  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_008255  CHU_0105  two component LuxR family transcriptional regulator  34.76 
 
 
215 aa  147  1.0000000000000001e-34  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0303042  normal  0.309888 
 
 
-
 
NC_010571  Oter_1700  two component LuxR family transcriptional regulator  38.86 
 
 
213 aa  147  1.0000000000000001e-34  Opitutus terrae PB90-1  Bacteria  normal  normal  0.226192 
 
 
-
 
NC_010682  Rpic_3729  two component transcriptional regulator, LuxR family  40.67 
 
 
214 aa  146  2.0000000000000003e-34  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0342  LuxR family DNA-binding response regulator  36.89 
 
 
213 aa  146  2.0000000000000003e-34  Brucella suis 1330  Bacteria  normal  0.0601944  n/a   
 
 
-
 
NC_008228  Patl_2290  two component LuxR family transcriptional regulator  33.18 
 
 
215 aa  147  2.0000000000000003e-34  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0358  LuxR family DNA-binding response regulator  36.89 
 
 
213 aa  146  2.0000000000000003e-34  Brucella ovis ATCC 25840  Bacteria  normal  0.363  n/a   
 
 
-
 
NC_012918  GM21_3105  two component transcriptional regulator, LuxR family  39.45 
 
 
223 aa  146  3e-34  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_0467  two component transcriptional regulator, LuxR family  35.71 
 
 
216 aa  145  4.0000000000000006e-34  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000507383 
 
 
-
 
NC_012856  Rpic12D_3406  two component transcriptional regulator, LuxR family  40.67 
 
 
214 aa  145  4.0000000000000006e-34  Ralstonia pickettii 12D  Bacteria  normal  0.588591  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  38.64 
 
 
224 aa  145  4.0000000000000006e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  38.43 
 
 
226 aa  145  5e-34  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  43.4 
 
 
220 aa  145  5e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  38.57 
 
 
214 aa  145  6e-34  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.0084678 
 
 
-
 
NC_013739  Cwoe_1233  two component transcriptional regulator, LuxR family  37.67 
 
 
220 aa  145  6e-34  Conexibacter woesei DSM 14684  Bacteria  normal  0.681342  normal  0.792953 
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  36.24 
 
 
220 aa  145  7.0000000000000006e-34  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_008146  Mmcs_0590  two component LuxR family transcriptional regulator  37.85 
 
 
215 aa  145  7.0000000000000006e-34  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0603  two component LuxR family transcriptional regulator  37.85 
 
 
215 aa  145  7.0000000000000006e-34  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0581  two component LuxR family transcriptional regulator  37.85 
 
 
215 aa  145  7.0000000000000006e-34  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  38.14 
 
 
222 aa  145  8.000000000000001e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_3359  two component transcriptional regulator, LuxR family  39.45 
 
 
219 aa  144  9e-34  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00321115  hitchhiker  0.000132937 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  38.64 
 
 
228 aa  144  9e-34  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_009483  Gura_2782  two component LuxR family transcriptional regulator  38.68 
 
 
214 aa  144  9e-34  Geobacter uraniireducens Rf4  Bacteria  normal  0.834695  n/a   
 
 
-
 
NC_011662  Tmz1t_1311  two component transcriptional regulator, LuxR family  37.56 
 
 
226 aa  143  2e-33  Thauera sp. MZ1T  Bacteria  normal  0.165019  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  37.56 
 
 
217 aa  143  2e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_010159  YpAngola_A3945  putative DNA-binding response regulator EsrB  36.19 
 
 
210 aa  143  2e-33  Yersinia pestis Angola  Bacteria  normal  0.0480381  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  37.79 
 
 
221 aa  143  2e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_009708  YpsIP31758_3833  putative DNA-binding response regulator EsrB  36.19 
 
 
210 aa  143  2e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3919  two component LuxR family transcriptional regulator  36.19 
 
 
210 aa  143  2e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2299  two component LuxR family transcriptional regulator  32.72 
 
 
221 aa  142  4e-33  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  35.61 
 
 
216 aa  142  4e-33  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  41.23 
 
 
227 aa  142  5e-33  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_011146  Gbem_2253  two component transcriptional regulator, LuxR family  34.26 
 
 
216 aa  142  6e-33  Geobacter bemidjiensis Bem  Bacteria  normal  0.174263  n/a   
 
 
-
 
NC_009972  Haur_4778  two component LuxR family transcriptional regulator  38.21 
 
 
208 aa  141  7e-33  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00000269792  n/a   
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  37.91 
 
 
223 aa  141  7e-33  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010322  PputGB1_1667  two component LuxR family transcriptional regulator  37.02 
 
 
219 aa  141  8e-33  Pseudomonas putida GB-1  Bacteria  normal  normal  0.869411 
 
 
-
 
NC_002939  GSU3229  LuxR family DNA-binding response regulator  35.68 
 
 
229 aa  141  9e-33  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1873  response regulator receiver protein  33.33 
 
 
215 aa  141  9e-33  Shewanella amazonensis SB2B  Bacteria  normal  0.56104  normal 
 
 
-
 
NC_009483  Gura_2780  two component LuxR family transcriptional regulator  36.67 
 
 
226 aa  140  9.999999999999999e-33  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2375  DNA-binding response regulator, LuxR family  35.41 
 
 
209 aa  140  9.999999999999999e-33  Bacillus cereus AH187  Bacteria  normal  0.248491  n/a   
 
 
-
 
NC_005945  BAS2109  LuxR family DNA-binding response regulator  34.93 
 
 
209 aa  140  1.9999999999999998e-32  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_2048  response regulator  34.93 
 
 
209 aa  140  1.9999999999999998e-32  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.102554  n/a   
 
 
-
 
NC_006274  BCZK2046  response regulator  34.93 
 
 
209 aa  140  1.9999999999999998e-32  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2265  LuxR family DNA-binding response regulator  34.93 
 
 
209 aa  140  1.9999999999999998e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.201191  n/a   
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  35.55 
 
 
226 aa  140  1.9999999999999998e-32  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_2437  two component transcriptional regulator, LuxR family  42.79 
 
 
218 aa  140  1.9999999999999998e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1021  two component transcriptional regulator, LuxR family  37.32 
 
 
216 aa  140  1.9999999999999998e-32  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.794365 
 
 
-
 
NC_011773  BCAH820_2290  DNA-binding response regulator, LuxR family  34.93 
 
 
209 aa  140  1.9999999999999998e-32  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000736213 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  40.2 
 
 
215 aa  139  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0769384 
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  40.82 
 
 
213 aa  139  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal 
 
 
-
 
NC_010506  Swoo_3747  two component LuxR family transcriptional regulator  37.14 
 
 
206 aa  139  3e-32  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  37.91 
 
 
209 aa  139  3.9999999999999997e-32  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  38.86 
 
 
206 aa  139  3.9999999999999997e-32  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  35.07 
 
 
230 aa  139  4.999999999999999e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0808908 
 
 
-
 
NC_011004  Rpal_3423  two component transcriptional regulator, LuxR family  36.57 
 
 
235 aa  139  4.999999999999999e-32  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324081  n/a   
 
 
-
 
NC_013595  Sros_6032  response regulator receiver protein  37.21 
 
 
218 aa  139  4.999999999999999e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.53611  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  37.79 
 
 
224 aa  138  6e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_009675  Anae109_1385  two component LuxR family transcriptional regulator  36.45 
 
 
212 aa  138  6e-32  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_2293  LuxR family DNA-binding response regulator  35.07 
 
 
211 aa  138  7e-32  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  38.97 
 
 
217 aa  138  7e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
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