| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mmc1_2093 |
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| Symbol | |
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| ID | 4480842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Magnetococcus sp. MC-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008576 |
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| Strand | + |
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| Start bp | 2566426 |
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| End bp | 2567046 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639722837 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_866000 |
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| Protein GI | 117925383 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000328625 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.180863 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTCGCA TTATTATGGC CGACGATCAT ACCATTTTTC GCCAAGGCTT GGCCCACCTA
CTTAGTGCCC ATCAAGAATT AGAAATTGTG GGTGAGGCTG GTCGCGGTGA TGACGCCTTA
CAGCTCATCC GTGATCTCAA TCCCGATGTG GCTTTGTTAG ATATCTCCAT GCCCGGCTTA
AATGGCCTGG ATGTGGTCAA AAGGGTGGTG GAGGAAAAAC GCCCTACCCG CCTCTTGCTG
CTTACCATGC ATGATGACCC TACCTTAGCA ATTAAAGCAG AACAGGCTGG CGCATTGGGT
TATGTGGTTA AGGATAATGC CTTCTCCGAA CTGTTGGACG CCATTCTAGC GGTGGCAGCC
GGTAAGCGGT TTGTCAGTGA AGTGGTCGCC GAAAAGGTCA ACGAGCTCGA ACGGCTGGAT
GACCTGCCCG TGCAACTCTC CCCCCGTGAA AAAGAGGTGG TCAGGCTTGT TGCCGATGGT
CAAACCAATA AAGAGATCGC CCGTAGCCTG GGCATAAGCC CCAAAACCGT CGATACCCAC
CGCACCCGGT TGATGCGTAA ACTCAACCTG CATACCACCG CCGATGTGGT GCGTTATGCC
ATGCGTATGG GTCTGGTTTA A
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| Protein sequence | MIRIIMADDH TIFRQGLAHL LSAHQELEIV GEAGRGDDAL QLIRDLNPDV ALLDISMPGL
NGLDVVKRVV EEKRPTRLLL LTMHDDPTLA IKAEQAGALG YVVKDNAFSE LLDAILAVAA
GKRFVSEVVA EKVNELERLD DLPVQLSPRE KEVVRLVADG QTNKEIARSL GISPKTVDTH
RTRLMRKLNL HTTADVVRYA MRMGLV
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